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getting_started.html
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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<title>Getting Started</title>
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta name="description" content="What the OpenWorm project is about.">
<!-- REPLICATE THIS IN ALL PAGES -->
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<link href="css/bootstrap.css" rel="stylesheet">
<link rel="stylesheet" href="css/font-awesome.css">
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<link href="css/main.css" rel="stylesheet">
<link href="css/docs.css" rel="stylesheet">
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</head>
<body>
<div id="pjax-content">
<!-- END REPEAT-->
<header class="jumbotron subhead" id="overview">
<div class="container">
<!--<div class="openworm_logo_header"></div>-->
<h1>Getting started</h1>
<p class="lead">
Overview of the project, its contents, and how to get started.
</p>
</div>
</header>
<div class="container">
<div class="row">
<div class="span3 bs-docs-sidebar">
<ul class="nav nav-list bs-docs-sidenav">
<li>
<a href="#goal"><i class="fa fa-chevron-right"></i>Our goal</a>
</li>
<li>
<a href="#codeanddoc"><i class="fa fa-chevron-right"></i>Code and documentation</a>
</li>
<li>
<a href="#askaquestion"><i class="fa fa-chevron-right"></i>Ask a question</a>
</li>
<li>
<a href="#stayconnected"><i class="fa fa-chevron-right"></i>Stay connected</a>
</li>
<li>
<a href="#contribute"><i class="fa fa-chevron-right"></i>Contribute</a>
</li>
</ul>
</div>
<div class="span9">
<!-- Goal
================================================== -->
<section id="goal">
<div class="page-header">
<h1>Our goal</h1>
</div>
<p class="lead">
OpenWorm aims to build the first comprehensive computational model of the <em>Caenorhabditis elegans</em> (<em>C. elegans</em>), a microscopic roundworm.
With less than a <strong>thousand cells</strong>, it solves basic problems such as feeding, mate-finding and predator avoidance.
Despite being extremely well studied in biology, this organism still eludes a deep, principled understanding of its biology.
<br/>
</p>
<div class="row-fluid padding-top-large">
<div class="span12 pagination-centered">
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<iframe width="420" height="315" src="https://www.youtube.com/embed/zjqLwPgLnV0" frameborder="0" allowfullscreen></iframe>
</div>
<div class="padding-top">
<h4>A brief introduction to <em>C. elegans</em></h4>
</div>
</div>
</div>
</div>
<p class="lead">
We are using a <strong>bottom-up</strong> approach, aimed at observing the worm behaviour <strong>emerge</strong> from a simulation of data derived from scientific experiments carried out over the past decade.
To do so we are incorporating the data available in the scientific community into software models.
We have developed tools such as <strong>Sibernetic</strong> and <strong>c302</strong>, open-source simulation platforms,
to be able to run these different models in concert, and created a unified <strong><a href="downloads.html#docker">Docker simulation stack</a></strong> to bring all these parts together.
We are also forging new collaborations with universities and research institutes to collect data that fill in the gaps.
</p>
<br/>
<div class="row-fluid padding-top-large">
<div class="span12 pagination-centered">
<div class="well">
<div class="centered">
<iframe width="420" height="315" src="https://www.youtube.com/embed/r2OBznK6HkI" frameborder="0" allowfullscreen></iframe>
</div>
<div class="padding-top">
<h4>This video shows recent progress from the project to build the simulated body of the worm.</h4>
</div>
</div>
</div>
</div>
</section>
<!-- Code and docs ================================================== -->
<section id="codeanddoc">
<div class="page-header">
<h1>Code and documentation</h1>
</div>
<p class="lead">
All the code we produce in the OpenWorm project is Open Source and available
on <a href="https://github.com/openworm" target="_blank">GitHub</a>.
This makes it easy for everyone to look at and play with.
</p>
<div class="span9 pagination-centered">
<i class="fa fa-github fa-xxl"></i>
</div>
<p class="lead">
Detailed documentation for each sub-project is available from the <a href="http://docs.openworm.org/projects" target="_blank">Projects</a> page,
and you can see an overview of tests on the core repositories <a href="https://github.com/openworm/.github/blob/main/testsheet/README.md" target="_blank">here</a>.
</p>
</section>
<!-- Ask a question ================================================== -->
<section id="askaquestion">
<div class="page-header">
<h1>Ask a question</h1>
</div>
<div class="span9 pagination-centered">
<i class="fa fa-question-sign fa-xxl"></i>
</div>
<p class="lead">
Nothing beats the chance to <a href="./contacts.html">ask a question for yourself</a>. No matter what your background is, or how naive you think your question is, feel free to <a href="./contacts.html">reach out</a>!
<br/>
</p>
</section>
<!-- Stay connected ================================================== -->
<section id="stayconnected">
<div class="page-header">
<h1>Stay connected</h1>
</div>
<div class="span9 pagination-centered">
<i class="fa fa-group fa-xxl"></i>
</div>
<div class="clearer large-spacer"></div>
<p class="lead">
OK, you like the project and you are interested in it. How about connecting with us to receive updates as we make progress?
There are different ways you can stay connected, and whether you prefer to receive casual updates or you want to "drink from the firehose", we can help connect you.
<br/><br/>
For more information about staying in sync, visit the <a href="./contacts.html">Contacts</a> page.
<br/>
</p>
</section>
<!-- Contribute ================================================== -->
<section id="contribute">
<div class="page-header">
<h1>Contribute</h1>
</div>
<div class="span9 pagination-centered">
<i class="fa fa-tint fa-xxl"></i>
</div>
<p class="lead">
It might be just a drop in the ocean but it's still going to help!
We are constantly looking for collaborators and people that share our vision.
<br/><br/>
If you want to contribute to the project in any way you should visit the <a href="./get_involved.html">Get Involved</a> page.
We have put together some common profiles but if yours doesn't fit in any of them please <a href="./contacts.html">drop us a line</a> anyway, we'd love to hear from you!
</p>
</section>
</div>
</div>
</div>
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