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    60 repositories

    • ICES-VMS-and-Logbook-Data-Call_Cefas

      Public
      repository for repsonse to ICES VMS& LOGBOOK DATACALL adapated to Cefas requirements
      R
      •
      GNU General Public License v3.0
      •5•0•12•0•Updated Oct 30, 2024Oct 30, 2024

    • BayOfBengal_ParticleTracking_paper

      Public
      Code used to run and post-process OceanParcels particle tracking simulations in the Bay of Bengal for a paper submitted to Ocean Science.
      Jupyter Notebook
      •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • aquanet-mod

      Public
      R scripts for AquaNet-Mod (The Aquaculture Disease Network Model).
      R
      •
      Other
      •0•0•2•0•Updated Oct 23, 2024Oct 23, 2024

    • aquanet

      Public
      R package containing the functions required to run AquaNet-Mod (The Aquaculture Disease Network Model).
      r-package
      R
      •
      Other
      •0•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • shipwreck-oil-detection-colab

      Public
      Google Colab tool for detecting oil spills from historical shipwrecks
      Jupyter Notebook
      •
      MIT License
      •0•0•3•0•Updated Sep 17, 2024Sep 17, 2024

    • MixME

      Public
      R package for Mixed-fishery Multi-stock Evaluation
      R
      •0•0•2•0•Updated Aug 28, 2024Aug 28, 2024

    • cefasRBR

      Public
      R package for working with RBR Profiling instruments
      R
      •
      MIT License
      •0•0•0•0•Updated Aug 22, 2024Aug 22, 2024

    • EcoEnsemble

      Public
      R package for implementing the ensemble framework for combining ecosystem models.
      C++
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Aug 20, 2024Aug 20, 2024

    • CO_AMM7

      Public
      AMM7 configuration for testing various vertical coordinate options
      Fortran
      •2•0•0•0•Updated Aug 6, 2024Aug 6, 2024

    • coco_labeller

      Public
      HTML
      •
      MIT License
      •1•0•8•0•Updated Aug 1, 2024Aug 1, 2024

    • pySBC

      Public
      Module for createing NEMO surface boundary conditions
      Python
      •2•0•0•0•Updated Aug 1, 2024Aug 1, 2024

    • pikeperch-homerange-salinity

      Public
      TeX
      •
      Other
      •0•0•0•0•Updated Jul 30, 2024Jul 30, 2024

    • welsh_gov_fisheries_toolbox

      Public
      Documentation and code related to the toolbox developed to support welsh goverment fisheries data management
      R
      •1•1•1•0•Updated Jul 25, 2024Jul 25, 2024

    • NEMO4.0-FABM

      Public
      Fortran
      •
      Other
      •1•1•2•0•Updated Jun 25, 2024Jun 25, 2024

    • Git_Training

      Public
      ssmod
      HTML
      •0•3•2•0•Updated Jun 3, 2024Jun 3, 2024

    • ices_vms_logbook_datacall

      Public
      Code to produce the datasets required for the annual ICES VMS/Logbook datacall
      R
      •0•1•2•1•Updated May 31, 2024May 31, 2024

    • OCCP_GIS_Training_R_Link_ArcGIS

      Public
      A public repository storing the code and outputs from the code linking R to ArcGIS.
      HTML
      •0•0•0•0•Updated May 6, 2024May 6, 2024

    • one-food-risk-tool

      Public
      HTML
      •
      Other
      •0•0•0•0•Updated Apr 17, 2024Apr 17, 2024

    • CO_AMM15

      Public
      Coastal Ocean (CO) configuration of the Atlantic Margin Model (1.5 km resolution)
      Fortran
      •1•0•0•0•Updated Apr 4, 2024Apr 4, 2024

    • cefasSpatialHubPackage

      Public
      An R Package to access Cefas Spatial Hub resources
      R
      •0•0•0•0•Updated Feb 15, 2024Feb 15, 2024

    • Cefas.MDR.OgrEnvironmentalDataRetrieval

      Public
      OGC Environment Data Retrieval API
      C#
      •0•1•0•0•Updated Feb 1, 2024Feb 1, 2024

    • plankton-dsg-challenge

      Public
      Notebooks, extended challenge description and metadata for the December 2021 Data Study Group with CEFAS
      Jupyter Notebook
      •
      Apache License 2.0
      •11•0•0•0•Updated Jan 10, 2024Jan 10, 2024

    • C8389-NIS-surveillance-simulator

      Public
      Simulator to determine detection time of NIS introduced at seed site with different surveillance efforts (assumed no spread).
      R
      •0•0•0•0•Updated Jan 10, 2024Jan 10, 2024

    • msy

      Public
      A collection of methods to estimate equilibrium reference points for fish stocks
      R
      •
      GNU General Public License v2.0
      •11•0•0•0•Updated Dec 21, 2023Dec 21, 2023

    • 324261-candidate-exercise

      Public
      Simple recruitment exercise
      1•0•0•0•Updated Dec 18, 2023Dec 18, 2023

    • MixUncertainty

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 12, 2023Dec 12, 2023

    • salmon-rod-exploitation

      Public
      Article and analysis code for ICES JMS paper _Estimation of returning Atlantic salmon stock from rod exploitation rate for principal salmon rivers in England & Wales_
      R
      •
      Other
      •0•0•0•0•Updated Oct 16, 2023Oct 16, 2023

    • cefasMOS

      Public
      R
      •0•0•0•0•Updated Sep 20, 2023Sep 20, 2023

    • h2020-smartfish

      Public
      This repo holds the manuscript and analysis code for a lights selectivity experiment done as part of the Horizon 2020 SMARTFISH project.
      HTML
      •
      Other
      •0•0•0•0•Updated Sep 8, 2023Sep 8, 2023

    • Probabilistic_Nutrient_Mapping_LiverpoolBay

      Public
      This repository contains the open source code used to produce the normalised cost surfaces mapping DIN in Liverpool Bay using satellite data.
      HTML
      •0•0•0•0•Updated Jul 11, 2023Jul 11, 2023