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    583 repositories

    • wiki

      Public
      SciWiki: Collective KnowledgeBase for Scientific Data and Use
      data-sciencebioinformaticswikicomputingsciwikifhdaslcommunitydocumentationopen-science
      HTML
      •
      Other
      •46•36•64•5•Updated Nov 9, 2024Nov 9, 2024

    • gig-map

      Public
      Build a map of genes present across a set of microbial genomes
      Python
      •4•12•0•0•Updated Nov 9, 2024Nov 9, 2024

    • nf-virscan-qc

      Public
      Nextflow workflow for performing quality control analysis of VirScan datasets
      Nextflow
      •0•1•0•0•Updated Nov 8, 2024Nov 8, 2024

    • seatrac-hackday-2024

      Public
      Materials for TRAC-sponsored TB Hackday 2024
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

    • tfcb_2024

      Public
      Course website for MCB 536 Tools for Computational Biology Fall 2024
      Jupyter Notebook
      •18•3•0•2•Updated Nov 8, 2024Nov 8, 2024

    • shiny-cromwell

      Public
      Shiny app for interacting with the Fred Hutch instances of Cromwell. Contact Taylor Firman.
      dasl
      R
      •
      MIT License
      •3•3•66•2•Updated Nov 7, 2024Nov 7, 2024

    • docker-proSCessoR

      Public
      Docker image with libraries needed to run proSCessoR
      Dockerfile
      •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • easybuild-life-sciences

      Public
      Howto and implementation documentation
      easybuildlifesciencescientific-softwareeasyconfig
      C++
      •6•21•6•0•Updated Nov 7, 2024Nov 7, 2024

    • ww-vc-trio_sanaz

      Public
      Variant calling WDL workflow using a trio of variant callers and analyzing consensus among them
      Jupyter Notebook
      •
      MIT License
      •2•1•0•0•Updated Nov 7, 2024Nov 7, 2024

    • aws-batch-wrapper

      Public
      Simplify interaction with AWS Batch at Fred Hutch
      Python
      •0•1•1•6•Updated Nov 7, 2024Nov 7, 2024

    • VISCtemplates

      Public
      Tools for writing reproducible reports at VISC
      visc
      R
      •
      Other
      •2•6•36•5•Updated Nov 6, 2024Nov 6, 2024

    • SANI

      Public
      Suspended Animation Neuron Identifier
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • pgmap

      Public
      R
      •1•0•3•1•Updated Nov 5, 2024Nov 5, 2024

    • gimap

      Public
      Genetic Interaction MAPping for dual target CRISPR screens
      HTML
      •0•0•19•1•Updated Nov 5, 2024Nov 5, 2024

    • Wellington-et-al-2024

      Public
      This is the code used for data analysis in the Wellington et al. 2024 paper.
      R
      •0•0•0•0•Updated Nov 2, 2024Nov 2, 2024

    • pca-salvage-therapy-predictimands

      Public
      Code supporting "Predictimands for Salvage Therapy in Biochemically Recurrent Prostate Cancer Using Joint Longitudinal and Failure Time Models"
      0•0•0•0•Updated Oct 27, 2024Oct 27, 2024

    • rna-qc-tool

      Public
      A Shiny app for interactive visualization of RNA quality control statistics
      R
      •0•1•0•0•Updated Oct 22, 2024Oct 22, 2024

    • dmshelper

      Public
      ✏️ A tool for composing your NIH Data Sharing Plan
      grantsnihtext-tools
      CSS
      •1•0•2•0•Updated Oct 22, 2024Oct 22, 2024

    • GDSCNsoilsites

      Public
      Homepage for BioDIGS Project. Learn about the project and download data.
      datametagenomicsstudent-researchbiodigs
      R
      •
      MIT License
      •0•1•10•0•Updated Oct 22, 2024Oct 22, 2024

    • target-data-viz

      Public
      Shiny app for visualizing TARGET pediatric AML data
      HTML
      •2•2•9•0•Updated Oct 21, 2024Oct 21, 2024

    • EBcb

      Public
      EasyBuild container build - A docker container for building software with EasyBuild
      Shell
      •1•7•0•0•Updated Oct 17, 2024Oct 17, 2024

    • itn-dashboard

      Public
      ITN Dashboard for data generated from metricminer
      dasl
      R
      •0•0•5•0•Updated Oct 13, 2024Oct 13, 2024

    • eipm-calculator

      Public
      R
      •0•0•0•0•Updated Oct 4, 2024Oct 4, 2024

    • microbiome-utils

      Public
      Utilities for microbiome pipelines
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • VISCfunctions

      Public
      R
      •
      Other
      •4•10•16•1•Updated Oct 2, 2024Oct 2, 2024

    • cbioportal-data-formatting

      Public
      A repository with easy-to-follow instructions on how to prepare you study data files for upload into cBioportal
      genomicscbioportalclinical-datagenomics-datadata-formatting
      Python
      •0•2•7•0•Updated Oct 1, 2024Oct 1, 2024

    • souper-star

      Public
      Nextflow workflow running soupercell on barcoded cell subsets
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Sep 26, 2024Sep 26, 2024

    • thymosight

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Sep 26, 2024Sep 26, 2024

    • r-shiny-base

      Public
      Base Docker container for R Shiny apps
      R
      •
      Apache License 2.0
      •9•6•1•0•Updated Sep 25, 2024Sep 25, 2024

    • shiny-app-template

      Public
      Template for creating Shiny web applications
      rshiny
      Python
      •5•8•1•0•Updated Sep 21, 2024Sep 21, 2024