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    20 repositories

    • metaflow-service

      Public
      🚀 Metadata tracking and UI service for Metaflow!
      Python
      •
      Apache License 2.0
      •71•0•0•0•Updated Jun 7, 2023Jun 7, 2023

    • setup-python

      Public
      Set up your GitHub Actions workflow with a specific version of Python
      TypeScript
      •
      MIT License
      •549•0•0•0•Updated Apr 20, 2023Apr 20, 2023

    • metaflow

      Public
      Build and manage real-life data science projects with ease.
      Python
      •
      Apache License 2.0
      •772•1•0•0•Updated Apr 18, 2023Apr 18, 2023

    • ssh-key-action

      Public
      GitHub Action that installs SSH key to .ssh
      JavaScript
      •
      MIT License
      •87•0•0•0•Updated Jan 30, 2023Jan 30, 2023

    • checkout

      Public
      Action for checking out a repo
      TypeScript
      •
      MIT License
      •1.7k•0•0•0•Updated Jan 30, 2023Jan 30, 2023

    • anndata

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Aug 24, 2022Aug 24, 2022

    • black-check

      Public
      github action to run black
      Dockerfile
      •
      MIT License
      •8•0•0•0•Updated May 18, 2022May 18, 2022

    • vireo

      Public
      Demultiplexing pooled scRNA-seq data with or without genotype reference
      Python
      •
      Apache License 2.0
      •27•0•0•0•Updated Jan 11, 2022Jan 11, 2022

    • bbknn

      Public
      Batch balanced KNN
      Python
      •
      MIT License
      •23•0•0•0•Updated Nov 10, 2021Nov 10, 2021

    • dask

      Public
      Parallel computing with task scheduling
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1.7k•0•0•0•Updated May 20, 2021May 20, 2021

    • sci-RNA-seq3_pipeline

      Public
      Fork of pipeline scripts for sci-RNA-seq3 (bash, R, python)
      Python
      •15•0•0•0•Updated Apr 14, 2021Apr 14, 2021

    • numpy

      Public
      The fundamental package for scientific computing with Python.
      C
      •
      BSD 3-Clause "New" or "Revised" License
      •10k•0•0•0•Updated Dec 18, 2020Dec 18, 2020

    • scipy

      Public
      Scipy library main repository
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5.2k•0•0•0•Updated Nov 6, 2020Nov 6, 2020

    • solo

      Public
      software to detect doublets
      Python
      •
      MIT License
      •13•0•0•0•Updated Nov 3, 2020Nov 3, 2020

    • cellxgene-gateway-old

      Public
      Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
      Python
      •
      Apache License 2.0
      •32•0•0•0•Updated Oct 28, 2020Oct 28, 2020

    • scanpy

      Public
      Single-Cell Analysis in Python. Scales to >1M cells.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •599•0•0•1•Updated Oct 9, 2020Oct 9, 2020

    • diem

      Public
      Clean up single-cell data
      R
      •6•0•0•0•Updated Jun 12, 2020Jun 12, 2020

    • parametric_tsne

      Public
      Python / Tensorflow / Keras implementation of Parametric tSNE algorithm
      Python
      •
      MIT License
      •31•0•0•0•Updated Dec 10, 2019Dec 10, 2019

    • PhenoGraph

      Public
      Subpopulation detection in high-dimensional single-cell data
      Python
      •
      MIT License
      •70•0•0•0•Updated Jul 12, 2019Jul 12, 2019

    • scrublet

      Public
      Detect doublets in single-cell RNA-seq data
      Jupyter Notebook
      •
      MIT License
      •73•0•0•0•Updated Jul 3, 2019Jul 3, 2019