Repositories list

• higlass-python

  Public
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer

  jupyter-notebook-extensionjupyter-lab-extensionpython

  Python

  •

  MIT License

  •12•53•19•3•Updated Nov 9, 2024Nov 9, 2024

• higlass

  Public
  Fast, flexible and extensible genome browser.

  genomicshi-chiglass+ 2gehlenborglabvisualization

  JavaScript

  •

  MIT License

  •51•311•248•30•Updated Nov 9, 2024Nov 9, 2024

• higlass-schema

  Public
  Pydantic models for HiGlass

  Python

  •

  MIT License

  •0•1•1•0•Updated Oct 18, 2024Oct 18, 2024

• clodius

  Public
  Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.

  hi-chiglassgehlenborglab

  Python

  •

  MIT License

  •21•39•35•5•Updated Aug 28, 2024Aug 28, 2024

• higlass-multivec

  Public
  Multivec Tracks for Higlass

  visualizationgehlenborglabhiglass

  HTML

  •

  MIT License

  •6•7•13•16•Updated Jul 25, 2024Jul 25, 2024

• higlass-zarr-datafetchers

  Public
  Plugin data fetchers for HiGlass, supporting visualization of Zarr-based files located in object storage systems

  JavaScript

  •2•3•0•0•Updated Apr 15, 2024Apr 15, 2024

• higlass-widget

  Public archive
  A standalone Jupyter Widget for HiGlass

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Feb 28, 2024Feb 28, 2024

• gene_annotations

  Public
  Python

  •1•5•3•0•Updated Feb 22, 2024Feb 22, 2024

• simple-httpfs

  Public
  Python

  •

  MIT License

  •12•37•3•7•Updated Dec 12, 2023Dec 12, 2023

• higlass-app

  Public
  A fully featured application around HiGlass for viewing, exploring, and annotating 1D and 2D genomic data

  JavaScript

  •

  MIT License

  •4•7•5•6•Updated Sep 21, 2023Sep 21, 2023

• higlass-text

  Public
  Display text in HiGlass

  JavaScript

  •

  MIT License

  •1•1•0•1•Updated Aug 14, 2023Aug 14, 2023

• higlass-manage

  Public
  A utility script to manage local docker instances of HiGlass

  higlassgehlenborglab

  Python

  •

  MIT License

  •9•23•41•5•Updated Jul 6, 2023Jul 6, 2023

• higlass-gnomad

  Public
  Display gnomAD data in HiGlass

  JavaScript

  •

  MIT License

  •0•2•1•0•Updated Jun 8, 2023Jun 8, 2023

• higlass-bigwig-datafetcher

  Public
  JavaScript

  •

  MIT License

  •2•3•0•0•Updated Jun 5, 2023Jun 5, 2023

• higlass-server

  Public
  Server component for HiGlass that manages and serves tiled data

  hi-chiglassgehlenborglab

  Python

  •

  MIT License

  •21•19•41•13•Updated May 23, 2023May 23, 2023

• higlass-labelled-points-track

  Public
  JavaScript

  •

  MIT License

  •0•1•0•6•Updated May 1, 2023May 1, 2023

• higlass-pileup

  Public
  JavaScript

  •

  MIT License

  •3•10•0•14•Updated Apr 24, 2023Apr 24, 2023

• higlass-register

  Public
  Helper tool to register pluggable tracks

  JavaScript

  •

  MIT License

  •1•1•0•9•Updated Apr 24, 2023Apr 24, 2023

• higlass-sequence

  Public
  Nucleotide sequence track for HiGlass

  JavaScript

  •

  MIT License

  •3•6•2•1•Updated Jan 20, 2023Jan 20, 2023

• higlass-transcripts

  Public
  Gene transcripts track for HiGlass

  JavaScript

  •

  MIT License

  •2•6•4•0•Updated Jan 11, 2023Jan 11, 2023

• range-track

  Public
  A plugin track for displaying ranges in HiGlass

  rangehiglasswhisker

  JavaScript

  •

  MIT License

  •0•2•0•25•Updated Jan 3, 2023Jan 3, 2023

• higlass-arcs

  Public
  HiGlass track for displaying arcs between disconnected regions

  arcshiglassarcs-track

  JavaScript

  •

  MIT License

  •0•9•0•16•Updated Dec 13, 2022Dec 13, 2022

• higlass-orthologs

  Public
  JavaScript

  •

  MIT License

  •0•4•0•0•Updated Dec 8, 2022Dec 8, 2022

• higlass-clinvar

  Public
  Display ClinVar data in HiGlass

  JavaScript

  •

  MIT License

  •0•2•0•0•Updated Dec 8, 2022Dec 8, 2022

• higlass-docker

  Public
  Builds a docker container wrapping higlass-server and higlass-client in nginx

  hi-chiglassgehlenborglab

  Shell

  •

  MIT License

  •14•32•49•0•Updated May 31, 2022May 31, 2022

• higlass-barbell

  Public
  JavaScript

  •

  MIT License

  •0•1•0•0•Updated May 21, 2022May 21, 2022

• higlass-vcf

  Public
  JavaScript

  •

  MIT License

  •0•3•0•1•Updated Feb 10, 2022Feb 10, 2022

• higlass-plugins

  Public
  HTML

  •

  MIT License

  •0•1•0•0•Updated Nov 1, 2021Nov 1, 2021

• scipy19

  Public
  Slides and demos from our SciPyConf 2019 talk

  Jupyter Notebook

  •

  MIT License

  •3•13•0•0•Updated Sep 28, 2021Sep 28, 2021

• higlass-app-content

  Public
  Content served through higlass-app like news, examples, plugins

  1•1•0•1•Updated Aug 8, 2021Aug 8, 2021