Repositories list

• qupath

  Public
  QuPath - Bioimage analysis & digital pathology

  groovyopencvmachine-learning+ 13imagejjavafximage-processinghistologycell-segmentationbioimage-informaticsdigital-pathology+ 6

  Java

  •

  GNU General Public License v3.0

  •278•1k•39•4•Updated Oct 5, 2024Oct 5, 2024

• qupath-extension-omero

  Public
  QuPath extension to work with images through OMERO's APIs

  Java

  •

  Apache License 2.0

  •1•3•26•0•Updated Oct 3, 2024Oct 3, 2024

• qupath-docs

  Public
  QuPath documentation

  Python

  •22•15•8•2•Updated Sep 30, 2024Sep 30, 2024

• qupath.github.io

  Public
  GitHub pages site

  SCSS

  •

  MIT License

  •4•2•0•0•Updated Sep 20, 2024Sep 20, 2024

• qupath-extension-instanseg

  Public
  The official QuPath extension for InstanSeg

  Java

  •

  Apache License 2.0

  •3•7•5•1•Updated Sep 20, 2024Sep 20, 2024

• qupath-extension-stardist

  Public
  QuPath extension to run StarDist nucleus detection

  Java

  •

  Apache License 2.0

  •6•34•3•1•Updated Sep 12, 2024Sep 12, 2024

• qupath-extension-djl

  Public
  A QuPath extension for working with Deep Java Library (https://djl.ai)

  Java

  •

  Apache License 2.0

  •4•5•3•0•Updated Sep 11, 2024Sep 11, 2024

• javadoc-viewer

  Public
  A simple JavaFX Javadoc viewer

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

• log-viewer

  Public
  Java

  •

  Apache License 2.0

  •2•5•2•0•Updated Sep 10, 2024Sep 10, 2024

• qupath-fxtras

  Public
  Reusable JavaFX tools for QuPath (and beyond)

  Java

  •

  Apache License 2.0

  •4•2•0•0•Updated Sep 10, 2024Sep 10, 2024

• qupath-extension-wsinfer

  Public
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/

  Java

  •

  Apache License 2.0

  •7•22•4•0•Updated Aug 29, 2024Aug 29, 2024

• qupath-extension-align

  Public
  QuPath extension to interactively align images

  Java

  •

  GNU General Public License v3.0

  •7•19•1•3•Updated Aug 20, 2024Aug 20, 2024

• qupath-extension-template

  Public template
  Template to help create a new QuPath extension

  Java

  •7•14•0•1•Updated Aug 16, 2024Aug 16, 2024

• openslide-jars

  Public
  Ruby

  •2•0•0•0•Updated Jul 5, 2024Jul 5, 2024

• qupath-extension-jpen

  Public
  QuPath extension using JPen for graphics tablet input

  Java

  •

  GNU General Public License v3.0

  •3•1•0•0•Updated Jul 3, 2024Jul 3, 2024

• qupath-extension-omero-web

  Public
  QuPath extension to work with images through OMERO's web API

  Java

  •

  GNU General Public License v3.0

  •12•8•9•0•Updated May 31, 2024May 31, 2024

• c-blosc-jars

  Public
  JAR files for the c-blosc native library.

  0•1•0•0•Updated Feb 29, 2024Feb 29, 2024

• qupath-extension-bioimageio

  Public
  A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)

  Java

  •

  Apache License 2.0

  •3•4•1•0•Updated Dec 1, 2023Dec 1, 2023

• qupath-extension-tensorflow

  Public archive
  Use TensorFlow from QuPath

  Java

  •

  GNU General Public License v3.0

  •5•8•0•0•Updated Nov 1, 2023Nov 1, 2023

• qupath-bioimage-io

  Public
  QuPath resources for Bioimage.IO

  3•1•0•1•Updated Sep 14, 2023Sep 14, 2023

• qupath-gradle-scripting-project

  Public template
  Groovy

  •2•0•0•0•Updated May 11, 2023May 11, 2023

• .github

  Public
  Public README for QuPath organization

  0•0•0•0•Updated Apr 23, 2023Apr 23, 2023

• qupath-bioimageio-spec

  Public
  Support for parsing the BioImage Model Zoo spec in Java

  Java

  •

  MIT License

  •1•0•0•0•Updated Nov 30, 2022Nov 30, 2022

• embo

  Public
  QuPath workshop as part of the EMBO Advanced Methods in Bioimage Analysis course 2021

  HTML

  •0•1•0•0•Updated Aug 30, 2022Aug 30, 2022

• 2022-qupath-hackathon

  Public
  From 26-29 April 2022

  Creative Commons Zero v1.0 Universal

  •0•8•0•0•Updated Apr 14, 2022Apr 14, 2022

• models

  Public
  Trained models for use with QuPath

  2•8•0•0•Updated Aug 7, 2021Aug 7, 2021

• qupath-bioformats-extension

  Public archive
  Extension to add Bio-Formats image support - **QuPath v0.1.2 only**

  Java

  •

  GNU General Public License v3.0

  •5•6•0•0•Updated Jun 5, 2021Jun 5, 2021

• qupath-weka-extension

  Public archive
  Extension to enable Weka within QuPath - **QuPath v0.1.2 only**

  Java

  •

  GNU General Public License v3.0

  •1•0•0•1•Updated Jun 5, 2021Jun 5, 2021

• qupath-matlab-extension

  Public archive
  Extension to help set up QuPath and MATLAB together - **QuPath v0.1.2 only**

  MATLAB

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Jun 5, 2021Jun 5, 2021

• colormap

  Public
  A Java package for generating and using linear and categorical colormaps.

  Java

  •

  Apache License 2.0

  •2•0•0•0•Updated May 15, 2021May 15, 2021