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    54 repositories

    • epizootic

      Public
      An R package for spatially explicit population models of disease transmission in wildlife
      R
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Sep 30, 2024Sep 30, 2024

    • pnpc

      Public
      What is the relationship between pathogens & planetary change?
      R
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated Sep 27, 2024Sep 27, 2024

    • virion

      Public
      The Global Virome in One Network
      virustaxonomyecological-networkvertebratedataset
      R
      •8•37•19•0•Updated Sep 27, 2024Sep 27, 2024

    • insectDisease

      Public
      An R package for working with the Ecological Database of the World's Insect Pathogens (EDWIP)
      TeX
      •
      GNU General Public License v3.0
      •1•13•0•0•Updated Sep 19, 2024Sep 19, 2024

    • bathaus

      Public
      how does urban roosting shape viral diversity and zoonotic risk in bats?
      R
      •0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

    • fingerprint-preprint

      Public
      Code for Gibb et al. (2024)
      R
      •0•0•0•0•Updated Jun 28, 2024Jun 28, 2024

    • PoxHost

      Public
      Predicting the poxvirus-mammal network with viral genetic features
      R
      •0•0•0•0•Updated Jun 17, 2024Jun 17, 2024

    • pharos-standard

      Public
      A template that meets the minimum standard for wildlife disease data 🦇🦠🗺️
      MIT License
      •0•0•1•0•Updated Jun 17, 2024Jun 17, 2024

    • pharos-core

      Public
      Workflows to format & standardize data into the Pharos data standard for upload 🔆
      R
      •
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated May 20, 2024May 20, 2024

    • synbias

      Public
      A review/simulation study of how synzootic interactions bias estimates of parasite richness.
      R
      •0•0•0•0•Updated May 9, 2024May 9, 2024

    • pharos-api

      Public
      Python
      •
      MIT License
      •0•0•13•0•Updated May 9, 2024May 9, 2024

    • pharos-frontend

      Public
      TypeScript
      •
      MIT License
      •0•0•16•0•Updated May 9, 2024May 9, 2024

    • pharos-documentation

      Public
      Markdown files for PHAROS website
      0•1•8•3•Updated May 8, 2024May 8, 2024

    • pharos-database

      Public
      Pharos AWS RDS Template
      Shell
      •
      MIT License
      •0•0•0•0•Updated May 8, 2024May 8, 2024

    • .github

      Public
      Github header
      1•0•0•0•Updated Mar 9, 2024Mar 9, 2024

    • hantaro

      Public
      Predicting rodent reservoirs of orthohantaviruses
      R
      •1•0•0•0•Updated Feb 26, 2024Feb 26, 2024

    • aireport

      Public
      Some data visualization for a white paper on AI and viral emergence
      R
      •0•0•0•0•Updated Feb 3, 2024Feb 3, 2024

    • battree

      Public
      Visualizing the bat tree of life and a bunch of Verena stuff on top of it
      R
      •0•0•0•0•Updated Jan 21, 2024Jan 21, 2024

    • arbo-comp

      Public
      Vector competence of arboviruses
      Creative Commons Attribution 4.0 International
      •1•0•0•0•Updated Jan 19, 2024Jan 19, 2024

    • docker-images

      Public
      A place to keep all the images to use for data deployment
      Shell
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Sep 30, 2023Sep 30, 2023

    • betamap

      Public
      The coevolutionary mosaic of bat betacoronavirus emergence risk
      R
      •0•1•0•0•Updated Sep 1, 2023Sep 1, 2023

    • bolide

      Public
      A review of mosquito-arbovirus vector competence experiments
      R
      •0•0•0•0•Updated Jul 2, 2023Jul 2, 2023

    • batgap

      Public
      Gap analysis of bat coronaviruses
      R
      •1•0•0•0•Updated May 12, 2023May 12, 2023

    • trefle

      Public
      Imputing the mammalian virome with the LF-SVD model
      imputationsvdzoonotic-diseasevirologyverena
      Julia
      •
      Creative Commons Attribution 4.0 International
      •1•1•2•0•Updated Mar 17, 2023Mar 17, 2023

    • datacov

      Public
      An open database of bat coronavirus surveillance (1996 to 2018)
      MIT License
      •1•2•0•0•Updated Mar 10, 2023Mar 10, 2023

    • minas-gerais-yfv

      Public
      Examining the drivers of YFV infection in Brazilian primates
      R
      •0•1•0•0•Updated Oct 17, 2022Oct 17, 2022

    • haystack

      Public
      Zoonotic risk prediction with the embedded LF-SVD model
      R
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Sep 20, 2022Sep 20, 2022

    • clover

      Public
      Four-in-one value pack of host-virus association data
      R
      •4•21•2•0•Updated Jun 30, 2022Jun 30, 2022

    • dangerzone

      Public
      Viral diversity and zoonotic risk in endangered species
      R
      •0•0•0•0•Updated Jun 26, 2022Jun 26, 2022

    • comet-standard

      Public
      A template that meets the minimum data standard for vector competence experiments 🦟✍️🔢
      MIT License
      •0•0•0•0•Updated Jun 23, 2022Jun 23, 2022