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Using xTEa for Drosophila #63

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adriludwig opened this issue Nov 1, 2022 · 1 comment
Closed

Using xTEa for Drosophila #63

adriludwig opened this issue Nov 1, 2022 · 1 comment

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@adriludwig
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Hi! I'd like to test this tool in Drosophila. We are currently using Mobster, but we up to test new ones and I saw your talk in Uppsala. We have a good TE library with consensus and correct classification. But,I have some simple questions, sorry for that:

  • Do we need some specific format for the header of the TE fasta file?
  • For the fasta full length sequences, is there a percentage of the total length that I should set? I mean, I'm wondering how this file can impact the result if I don't choose the right size.
  • Did you already noticed the use of this tool in other species?
    Thank you very much
@simoncchu
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Hi, I didn't test on Drosophila, but I think maybe you can follow this thread to have a test: #20

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@simoncchu @adriludwig