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environment.yml
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environment.yml
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name: serotyper
channels:
- anaconda
- r
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- blast=2.13.0=hf3cf87c_0
- bz2file=0.98=py_0
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.07.19=h06a4308_0
- curl=7.83.1=h2283fc2_0
- entrez-direct=16.2=he881be0_1
- gettext=0.19.8.1=h73d1719_1008
- joblib=1.1.0=pyhd3eb1b0_0
- keyutils=1.6.1=h166bdaf_0
- krb5=1.19.3=h08a2579_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- libblas=3.9.0=16_linux64_openblas
- libcblas=3.9.0=16_linux64_openblas
- libcurl=7.83.1=h2283fc2_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.4.2=h7f98852_5
- libgcc-ng=12.1.0=h8d9b700_16
- libgfortran-ng=12.1.0=h69a702a_16
- libgfortran5=12.1.0=hdcd56e2_16
- libgomp=12.1.0=h8d9b700_16
- libidn2=2.3.3=h166bdaf_0
- liblapack=3.9.0=16_linux64_openblas
- libnghttp2=1.47.0=hff17c54_1
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.21=pthreads_h78a6416_3
- libsqlite=3.39.3=h753d276_0
- libssh2=1.10.0=hf14f497_3
- libstdcxx-ng=12.1.0=ha89aaad_16
- libunistring=0.9.10=h7f98852_0
- libuuid=2.32.1=h7f98852_1000
- libzlib=1.2.12=h166bdaf_2
- ncurses=6.3=h27087fc_1
- nomkl=1.0=h5ca1d4c_0
- openssl=3.0.5=h166bdaf_2
- packaging=21.3=pyhd3eb1b0_0
- pcre=8.45=h9c3ff4c_0
- perl=5.32.1=2_h7f98852_perl5
- perl-archive-tar=2.40=pl5321hdfd78af_0
- perl-carp=1.38=pl5321hdfd78af_4
- perl-common-sense=3.75=pl5321hdfd78af_0
- perl-compress-raw-bzip2=2.201=pl5321h87f3376_1
- perl-compress-raw-zlib=2.105=pl5321h87f3376_0
- perl-encode=3.19=pl5321hec16e2b_1
- perl-exporter=5.72=pl5321hdfd78af_2
- perl-exporter-tiny=1.002002=pl5321hdfd78af_0
- perl-extutils-makemaker=7.64=pl5321hd8ed1ab_0
- perl-io-compress=2.106=pl5321h87f3376_1
- perl-io-zlib=1.11=pl5321hdfd78af_0
- perl-json=4.09=pl5321hdfd78af_0
- perl-json-xs=2.34=pl5321h9f5acd7_5
- perl-list-moreutils=0.430=pl5321hdfd78af_0
- perl-list-moreutils-xs=0.430=pl5321hec16e2b_1
- perl-parent=0.236=pl5321hdfd78af_2
- perl-pathtools=3.75=pl5321hec16e2b_3
- perl-scalar-list-utils=1.62=pl5321hec16e2b_1
- perl-types-serialiser=1.01=pl5321hdfd78af_0
- pip=22.2.2=pyhd8ed1ab_0
- pyparsing=3.0.4=pyhd3eb1b0_0
- python=3.10.6=ha86cf86_0_cpython
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python_abi=3.10=2_cp310
- readline=8.1.2=h0f457ee_0
- screed=1.0.4=py_0
- setuptools=65.3.0=pyhd8ed1ab_1
- six=1.16.0=pyhd3eb1b0_1
- threadpoolctl=2.2.0=pyh0d69192_0
- tk=8.6.12=h27826a3_0
- tzdata=2022c=h191b570_0
- wget=1.20.3=ha35d2d1_1
- wheel=0.37.1=pyhd8ed1ab_0
- xz=5.2.6=h166bdaf_0
- zlib=1.2.12=h166bdaf_2
- pip:
- biopython==1.79
- bottleneck==1.3.5
- mmh3==3.0.0
- numexpr==2.8.3
- numpy==1.23.2
- pandas==1.4.3
- pytz==2022.1
- scikit-learn==1.1.1
- scipy==1.9.1
prefix: /root/anaconda3/envs/serotyping