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barcode overlap checking needs to limit overlap from start #16

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jinfengzou-uhn opened this issue Feb 28, 2020 · 0 comments

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jinfengzou-uhn commented Feb 28, 2020

extract_barcode.py

for barcode in blist:
if sum([barcode in b for b in blist]) > 1:
overlap = True

"startswith" is better than "in": if sum([b.startswith(barcode) b for b in blist]) > 1
For example, ACG and TACG are not overlapped.

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