Linked-Read Whole Genome Sequencing Profiles Structural Variant Landscape of Gliomas with Barcode-Level Evidence
This repository contains custom code used for analysis and plotting in Tian et al. (In Press)
Linked-read whole-genome sequencing (EGASXXXXXXXX) datasets generated and analysed in this study are available through the European Genome-Phenome Archive (https://www.ebi.ac.uk/ega/studies/) repository, in the form of FASTQ or BAM files.
Processed single-nuclei RNA sequencing data are publically available through this GitHub repository, in the form of an RDS file containing RNA expression profiles and cell type annotations.
Source data for Figures 1-5 and Supplementary Figures 1-5 and original CSV files for Supplementary Tables 1-4 are available in the Supplementary Information section of the manuscript. All other data supporting the findings of this study are available from the corresponding author on reasonable request.
Dr. Trevor Pugh ([email protected])