Retrieve_databundle fails

[energyLS]

Checklist

• I am using the current main branch or the latest release. Please indicate.
• I am running on an up-to-date pypsa-africa environment. Update via conda env update -f envs/environment.yaml.

Describe the Bug

Even with a fresh repo, the retrieve_databundle rule fails: snakemake complains about missing output files.

snakemake -j1 retrieve_databundle_light --force

Please see the error message for details. Increasin the --latency-wait to 100 seconds didn't help.

snakemake -j1 retrieve_databundle_light --force --latency-wait 100

Error Message

If applicable, paste any terminal output to help illustrating your problem.
In some cases it may also be useful to share your list of installed packages: conda list.

Building DAG of jobs...
Using shell: /usr/bin/bash
Provided cores: 1 (use --cores to define parallelism)
Rules claiming more threads will be scaled down.
Job stats:
job                          count    min threads    max threads
-------------------------  -------  -------------  -------------
retrieve_databundle_light        1              1              1
total                            1              1              1

Select jobs to execute...

[Fri Jul 29 12:00:33 2022]
rule retrieve_databundle_light:
    output: data/costs.csv, data/eez/eez_v11.gpkg, data/hydro_capacities.csv, data/natura.tiff, cutouts/africa-2013-era5.nc, data/gebco/GEBCO_2021_TID.nc, data/copernicus/PROBAV_LC100_global_v3.0.1_2019-nrt_Discrete-Classification-map_EPSG-4326.tif, data/ssp2-2.6/2030/era5_2013/Africa.nc, data/custom_powerplants.csv, data/landcover
    log: logs/retrieve_databundle.log
    jobid: 0
    reason: Forced execution
    resources: tmpdir=/tmp

Waiting at most 100 seconds for missing files.
MissingOutputException in line 122 of /mnt/c/Users/scl38887/Documents/git/pypsa-africa/Snakefile:
Job Missing files after 100 seconds. This might be due to filesystem latency. If that is the case, consider to increase the wait time with --latency-wait:
data/eez/eez_v11.gpkg
data/gebco/GEBCO_2021_TID.nc
data/copernicus/PROBAV_LC100_global_v3.0.1_2019-nrt_Discrete-Classification-map_EPSG-4326.tif completed successfully, but some output files are missing. 0
Removing output files of failed job retrieve_databundle_light since they might be corrupted:
data/costs.csv, data/hydro_capacities.csv, data/natura.tiff, cutouts/africa-2013-era5.nc, data/ssp2-2.6/2030/era5_2013/Africa.nc, data/custom_powerplants.csv, data/landcover
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: .snakemake/log/2022-07-29T120031.343377.snakemake.log

[davide-f]

@energyLS On it! I'll fix it in the coming hour

[davide-f]

@energyLS Thanks for noticing! now the problem should be fixed

[energyLS]

Yes. Just tried it, it's fixed. Thanks a lot!