diff --git a/core/deployment/src/main/java/io/quarkus/deployment/configuration/BuildTimeConfigurationReader.java b/core/deployment/src/main/java/io/quarkus/deployment/configuration/BuildTimeConfigurationReader.java
index 326fd9c0b924a..2e6d5e4b0a1ca 100644
--- a/core/deployment/src/main/java/io/quarkus/deployment/configuration/BuildTimeConfigurationReader.java
+++ b/core/deployment/src/main/java/io/quarkus/deployment/configuration/BuildTimeConfigurationReader.java
@@ -1018,28 +1018,40 @@ private Converter<?> getConverter(SmallRyeConfig config, Field field, ConverterT
          */
         private Set<String> getAllProperties(final Set<String> registeredRoots) {
             Set<String> properties = new HashSet<>();
+
+            // Get all properties, including the ones generated by interceptors, but these do not include profiles
             for (String property : config.getPropertyNames()) {
                 properties.add(property);
             }
 
+            Set<String> propertiesToRemove = new HashSet<>();
+            Set<String> propertiesToAdd = new HashSet<>();
+
+            // Get properties per source to collect profiled properties and exclude properties that are build related
             for (ConfigSource configSource : config.getConfigSources()) {
                 if (configSource instanceof SysPropConfigSource || configSource instanceof EnvConfigSource
                         || "PropertiesConfigSource[source=Build system]".equals(configSource.getName())) {
                     for (String property : configSource.getPropertyNames()) {
                         NameIterator ni = new NameIterator(property);
                         if (ni.hasNext() && PropertiesUtil.isPropertyInRoot(registeredRoots, ni)) {
-                            properties.add(property);
+                            propertiesToAdd.add(property);
                         } else {
-                            properties.remove(property);
+                            propertiesToRemove.add(property);
                             if (configSource instanceof EnvConfigSource) {
-                                properties.remove(StringUtil.toLowerCaseAndDotted(property));
+                                propertiesToRemove.add(StringUtil.toLowerCaseAndDotted(property));
                             }
                         }
                     }
                 } else {
-                    properties.addAll(configSource.getPropertyNames());
+                    propertiesToAdd.addAll(configSource.getPropertyNames());
                 }
             }
+
+            // A property may exist in an excluded source and an include source. We don't have a way to know, so we
+            // just remove the excluded ones and add the ones to be included, so the property is back there again
+            properties.removeAll(propertiesToRemove);
+            properties.addAll(propertiesToAdd);
+
             return properties;
         }