Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Sparse-to-dense coercion of sparse matrices in SummarizedExperiment and/or SingleCellExperiment #145

Closed
axelklenk opened this issue Mar 8, 2024 · 0 comments · Fixed by #151
Closed

Sparse-to-dense coercion of sparse matrices in SummarizedExperiment and/or SingleCellExperiment #145

axelklenk opened this issue Mar 8, 2024 · 0 comments · Fixed by #151
Assignees
@axelklenk
Labels
enhancement

Comments

@axelklenk
Copy link
Collaborator

Assays contained in a SummarizedExperimentand/or SingleCellExperiment are coerced using as.matrix() when they are extracted from their container, thereby losing potential advantages of other matrix representations such a sdgCMatrix.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@axelklenk axelklenk

Labels
enhancement
Projects
Support for single-cell data
Status: Done
Milestone
No milestone
Development

Successfully merging a pull request may close this issue.

disable explicit sparse-to-dense coercion when unwrapping … rcastelo/GSVA
1 participant
@axelklenk