cover.yaml

# Some of this workflow was borrowed from https://github.com/stan-dev/cmdstanr/blob/master/.github/workflows
# under the BSD 3-Clause License: https://github.com/stan-dev/cmdstanr/blob/master/LICENSE.md.
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# BSD 3-Clause License
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on: [push, pull_request]

name: cover

jobs:
  cover:
    name: "Linux"
    if: "! contains(github.event.head_commit.message, '[ci skip]')"
    runs-on: ubuntu-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      NOT_CRAN: true

    steps:
      - name: cmdstan env vars
        run: |
          echo "CMDSTAN_PATH=${HOME}/.cmdstan" >> $GITHUB_ENV
        shell: bash

      - uses: actions/checkout@v3
      - uses: r-lib/actions/setup-r@v2
      - uses: r-lib/actions/setup-pandoc@v1

      - name: Install system dependencies
        run: |
          sudo apt-get update
          sudo apt-get install -y libglpk-dev libglpk40 libcurl4-openssl-dev openmpi-bin openmpi-common libopenmpi-dev || true

      - name: Repos
        run: |
          cat("\noptions(repos=c(ropensci='https://ropensci.r-universe.dev',CRAN ='https://cloud.r-project.org'))\n", file = "~/.Rprofile", append = TRUE)
        shell: Rscript {0}

      - uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: any::covr
          needs: check

      - name: Install cmdstan
        run: |
          cmdstanr::check_cmdstan_toolchain(fix = TRUE)
          cmdstanr::install_cmdstan(cores = 2)
        shell: Rscript {0}

      - name: Test coverage
        run: covr::codecov(type = "tests", quiet = FALSE)
        shell: Rscript {0}