Conversion to NIfTI removes/excludes half of image volume

[m-lyon]

Converting certain datasets into NIfTI creates a NIfTI image with only half of the image data available (see below).

This bug is present on v1.0.20190902 but not v1.0.20190410, as the April version converts the image correctly. I've tested this on both OSX 10.15 and Ubuntu 18.04.

The command used to create the image below was
dcm2niix -z y -x n -o ./ -f t1_incorrect DCM_ANON/

I have uploaded the anonymised DICOMs, and the incorrectly converted NIfTI image to GDrive.

[neurolabusc]

Replicates issues 373, 355, 306. I would recommend acquiring future data without interpolation (ZIP2) that increases resolution at the cost of blurring, processing speed, and disk space.

This issue will be resolved in next stable release, which will be generated when issue 377 is closed. In the mean time, I would suggest using the development build:

git clone --branch development https://github.com/rordenlab/dcm2niix.git
cd dcm2niix/console
make
./dcm2niix

Windows users should be able to get a compiled version from AppVeyor.