From d84e5aca4035b2a8bf0b639dbbff924cc0eb4f66 Mon Sep 17 00:00:00 2001 From: artuurC Date: Tue, 5 Sep 2023 14:19:10 +0200 Subject: [PATCH] Removed minimsom from toml and adapted readme --- README.md | 2 +- pyproject.toml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index cfedb6a..a527b70 100644 --- a/README.md +++ b/README.md @@ -50,7 +50,7 @@ ff = fs.main.read_FCS("./tests/data/ff.fcs") fsom = fs.main.FlowSOM(ff, cols_to_use=[8, 11, 13, 14, 15, 16, 17], xdim=10, ydim=10, n_clus=10) # Plot the FlowSOM results -p = fs.pl.plot_stars(fsom, background_values=fsom.get_cluster_data().obs.metaclustering +p = fs.pl.plot_stars(fsom, background_values=fsom.get_cluster_data().obs.metaclustering) p.show() ``` diff --git a/pyproject.toml b/pyproject.toml index 0cb9aa0..18ce909 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -21,7 +21,7 @@ urls.Source = "https://github.com/artuurC/FlowSOM" urls.Home-page = "https://github.com/artuurC/FlowSOM" dependencies = [ "mudata", "numpy", "matplotlib", "pandas", "scipy", "pytometry", - "minisom", "scikit-learn", "python-igraph", "pytest", + "scikit-learn", "python-igraph", "pytest", "session-info", "pathlib", "numba" ]