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Hello, This error suggests that after the translation to mouse by orthologous gene pairs, zero rows remained in the data frame. One reason might be a corrupt cache item left behind after a failed download. To test this, I recommend to try with an empty cache:
Hello!
I was following this tutorial (https://saezlab.github.io/decoupleR/articles/pw_bk.html) for pathway activity inference. I have mouse data, so I tried:
net <- get_progeny(organism = 'mouse', top = 100)
but I got this:
R version: 4.4.1
decoupleR: 2.10.0
OmnipathR: 3.11.10
dplyr: 1.1.4
tibble: 3.2.1
tidyr: 1.3.1
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