Benchmark by='source' does not seem to work correctly #149
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Hi, I am trying to please reviewers and provide benchmark statistics for individual TFs.
According to decoupler-py's 'read the docs' page, this should be possible using the argument by='source' in the 'benchmark' function.
When I run benchmark with by='experiment', it runs fine and gives me the expected output matrix of benchmarking statistics.
When I run with by='source', the verbose output is identical:
but I get an empty data frame returned, and I don't understand why.
Here is the code used to run this analysis - the files obs_limit.txt, bench_limit.txt are attached (they are limited subsets of the full benchmarking set for the purpose of the reproducible example), as is the GRN (CelEsT_GRN.txt).
I am using decoupler 1.6.0 and python 3.8.18.
obs_limit.txt
bench_limit.txt
CelEsT_GRN.txt
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