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Perhaps don't make it the default, though: If you leave the old output there while the new input is displayed above, the screen is in an inconsistent state. If for some reason the network is delayed a bit, you could end up with a "wrong answer" being displayed for quite a while.
The spinner showing computation in progress should be much more obvious, I think - like big and in the middle of the page. Then it would be clear that what is shown is not quite what it should be.
See http://ask.sagemath.org/question/33024/prevent-sagemathcell-from-clearing-output-window/
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