diff --git a/scripts/GLM_script_light.R b/scripts/GLM_script_light.R index 2ea7e21..f4e3dd8 100644 --- a/scripts/GLM_script_light.R +++ b/scripts/GLM_script_light.R @@ -4,34 +4,34 @@ # load and install required packages for the script if (!require("data.table")) { - install.packages("data.table", dependencies = TRUE) + install.packages("data.table", dependencies = TRUE, repos = "http://cran.us.r-project.org") library(data.table) } if (!require("glmnet")) { - install.packages("glmnet", dependencies = TRUE) + install.packages("glmnet", dependencies = TRUE, repos = "http://cran.us.r-project.org") library(glmnet) } if (!require("tictoc")) { - install.packages("tictoc", dependencies = TRUE) + install.packages("tictoc", dependencies = TRUE, repos = "http://cran.us.r-project.org") library(tictoc) } if (!require("dplyr")) { - install.packages("dplyr", dependencies = TRUE) + install.packages("dplyr", dependencies = TRUE, repos = "http://cran.us.r-project.org") library(dplyr) } if (!require("stringr")) { - install.packages("stringr", dependencies = TRUE) + install.packages("stringr", dependencies = TRUE, repos = "http://cran.us.r-project.org") library(stringr) } if (!require("cutpointr")) { - install.packages("cutpointr", dependencies = TRUE) + install.packages("cutpointr", dependencies = TRUE, repos = "http://cran.us.r-project.org") library(stringr) } if (!require("GenomicAlignments")) { if (!requireNamespace("BiocManager", quietly = TRUE)) - install.packages("BiocManager") + install.packages("BiocManager", repos = "http://cran.us.r-project.org") BiocManager::install("GenomicAlignments") library(GenomicAlignments)