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Trouble building htslib-1.11.tar.bz2 #1243
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Thanks for the comprehensive report. It looks like this is the problem with your copies of gcc:
which I suspect may be related to this:
It looks like you have a conda environment set up, which may be stopping your copies of gcc from finding the right shared libraries. If this is the case, you may find it easier to install htslib using bioconda. See #1125 for instructions, although to get htslib itself, you may want to change the last line to:
Alternatively, you need to open a shell without starting the conda environment, and then try running |
Thanks @daviesrob I've copied over my I'll try to do the installation again. The default version of
Then I get an error from trying to launch
|
I would like to determine if this is an underlying issue with Thanks for your help |
Clearly the configure script found libbz2 on your system, so the config.log file should indicate where (it may take a bit of hunting).
However this is implying otherwise. Some thoughts:
I can't explain otherwise why configure would detect it, gcc would compile and link it, but the run time in bash can no longer find the libraries it just built with. |
There's something a bit odd about your set-up, as Anyway, it looks like your
The dynamic linker uses various methods to find libraries. You could look in
which will give you lots of information about where it's looking. If you look for libbz2.so in the output you should be able to find the interesting bit. As a simple solution, if you find a directory with
(substituting /path with the one you actually need). |
I'm running into problems trying to build
htslib-1.11.tar.bz2
:More details here
config.log
Note: There are 4 different versions of
gcc
supplied on the system and I get the same error trying each of themTrying newest version available:
gcc/7.3.0
Additional information:
The text was updated successfully, but these errors were encountered: