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No warning on messed up VCF #1778

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pd3 opened this issue Apr 30, 2024 · 0 comments
Open

No warning on messed up VCF #1778

pd3 opened this issue Apr 30, 2024 · 0 comments

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@pd3
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pd3 commented Apr 30, 2024

The VCF parser silently drops FORMAT fields when FORMAT column is ".". Perhaps it should complain when the corresponding sample fields are something else than "." in such case. See the example in samtools/bcftools#2173

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