Documentation is generally distributed to live in-folder with the code in the form of a markdown file, with the exception of generic root-level documentation, which is located in the /docs folder (here).
- Getting Started - developers - how to run bluegenes locally so you can make changes
- BlueGenes API Docs
- Continuous integration and continuous deployment with TravisCI.
- Building BlueGenes for production - how to launch it to servers, for production use.
- Troubleshooting BlueGenes issues - steps for when the computer says 'no'.
- Configuring BlueGenes - includes how to configure Analytics and which mines are shown.
- Server-side config - such as port number, default intermine url.
- Tool API - configuring and installing tools