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Latest minimap2 version reduces peak memory #54

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nikostr opened this issue Sep 20, 2024 · 0 comments
Open

Latest minimap2 version reduces peak memory #54

nikostr opened this issue Sep 20, 2024 · 0 comments
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@nikostr
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nikostr commented Sep 20, 2024

Description of the bug

The latest version of minimap2 changes a default setting (--cap-kalloc) to reduce peak memory consumption. I keep running into memory issues, with the MINIMAP2_ALIGN_ASSEMBLY step requiring more than 100GB of RAM - would it make sense to update the version of minimap2 used in this pipeline?

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@nikostr nikostr added the bug Something isn't working label Sep 20, 2024
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