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JN.1.2 + S:H1101Y (38 sequences, mainly Ireland) #1322

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FedeGueli opened this issue Jan 21, 2024 · 1 comment
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JN.1.2 + S:H1101Y (38 sequences, mainly Ireland) #1322

FedeGueli opened this issue Jan 21, 2024 · 1 comment

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@FedeGueli
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FedeGueli commented Jan 21, 2024

There coulkd be a sublineage if JN.1.2 growing with a S2 mutation S:h1101Y

Defining mutations: JN.1.2 > A27540G > S:H1101Y (C24863T)

Query: G25249T , 24863T, C18894T

Samples : 33

IDs:
EPI_ISL_18585301, EPI_ISL_18599133, EPI_ISL_18631336-18631337,
EPI_ISL_18631344, EPI_ISL_18631350, EPI_ISL_18635951,
EPI_ISL_18652352, EPI_ISL_18660720, EPI_ISL_18660747,
EPI_ISL_18673572, EPI_ISL_18673603-18673604, EPI_ISL_18676529,
EPI_ISL_18688043, EPI_ISL_18689885, EPI_ISL_18690091,
EPI_ISL_18717998, EPI_ISL_18722041, EPI_ISL_18723686,
EPI_ISL_18727203, EPI_ISL_18727787, EPI_ISL_18729422,
EPI_ISL_18746107, EPI_ISL_18754730, EPI_ISL_18755911,
EPI_ISL_18755921, EPI_ISL_18763483, EPI_ISL_18763729,
EPI_ISL_18772089, EPI_ISL_18772096, EPI_ISL_18772106,
EPI_ISL_18793983

Tree:
Screenshot 2024-01-21 alle 23 51 14
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_60104_d9b560.json?label=id:node_6848366

@FedeGueli FedeGueli changed the title JN.1.2 + S:H1101Y (33 sequences, mainly Ireland) JN.1.2 + S:H1101Y (38 sequences, mainly Ireland) Jan 25, 2024
FedeGueli referenced this issue in cov-lineages/pango-designation Feb 1, 2024
@FedeGueli
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Designated JN.1.2.1 via cov-lineages/pango-designation@7058743

@FedeGueli FedeGueli added this to the JN.1.2.1 milestone Feb 1, 2024
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