Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

KP.2 + S:V1176F (10 seqs , 3 countries Aus,Can, CHN) #1550

Closed
FedeGueli opened this issue May 7, 2024 · 2 comments
Closed

KP.2 + S:V1176F (10 seqs , 3 countries Aus,Can, CHN) #1550

FedeGueli opened this issue May 7, 2024 · 2 comments

Comments

@FedeGueli
Copy link

S:V1176F was one of the defining mutation of Gamma/P.1 now re-appeared in a small lineage in Australia
I will track here for a while to see if it could turn to be advantageous ( i doubt but there is a good trend of mutation in the 1000-1200 region of the spike in fast FLiRT lineages so worth to look at it)

KP.2> C4234T > A11782G, S:V1176F (G25088T)
Query: C4234T , A11782G ,G25088T
Samples: 8
First collected in Queensland on 2024-03-12
Last collected in NSW on 2024-04-26
Countries : Australia (NSW,QLD) , Canada, China (via GBW)
IDs:EPI_ISL_19029777, EPI_ISL_19046810, EPI_ISL_19054774,
EPI_ISL_19069460, EPI_ISL_19073967, EPI_ISL_19093650,
EPI_ISL_19108075, EPI_ISL_19108082
Tree:
Screenshot 2024-05-07 alle 23 49 41
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_34e78_a0dca0.json?c=gt-S_1176&gmax=25384&gmin=21563&label=id:node_6980868

@FedeGueli FedeGueli changed the title KP.2 + S:V1176F (8 seqs , 3 countries Aus,Can, CHN) KP.2 + S:V1176F (10 seqs , 3 countries Aus,Can, CHN) May 14, 2024
@FedeGueli
Copy link
Author

10

@FedeGueli
Copy link
Author

Designated KP.2.12 via cov-lineages/pango-designation@426e156

@FedeGueli FedeGueli added this to the KP.2.12 milestone May 15, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

1 participant