JN.1.50 + S:R346K (5 seq, 3 countries)

[DoropFan]

Sub-lineage of:JN.1.50
Earliest sequence:2024-05-13/France|EPI_ISL_19176467
Most recent sequence:2024-06-05/Spain|EPI_ISL_19216746
Countries circulating:France(2), England(2), Spain(1)
Sequences:5

UShER Tree
JN.1.50>ORF1a:N1540S(A4884G, T4885C)>S:R346K(G22599A), T27152C

Query: G22599A, A4884G, T22896C or better query : G22599A, A4884G, T27152C (Edited)

CovSpectrum
Genomes
EPI_ISL_19204281
EPI_ISL_19204292
EPI_ISL_19176467
EPI_ISL_19216654
EPI_ISL_19216746

[FedeGueli]

Thx for proposing , i ve seen it yesterday too!

i ve corrected the query to G22599A, A4884G, T22896C ( instead of A22896C ,the starting nuc should be always the WT one or empty if unsure of what it is)

Anyway a better query is G22599A, A4884G, T27152C that finds all 5 samples

[aviczhl2]

Designated ME.1 via cov-lineages/pango-designation@3bd6f7c

[DoropFan]

Thx for proposing , i ve seen it yesterday too!

i ve corrected the query to G22599A, A4884G, T22896C ( instead of A22896C ,the starting nuc should be always the WT one or empty if unsure of what it is)

Anyway a better query is G22599A, A4884G, T27152C that finds all 5 samples

Thank you as always.
I'm sorry I haven't done the basics.
I want to learn little by little and make fewer mistakes.

[FedeGueli]

Thx for proposing , i ve seen it yesterday too!
i ve corrected the query to G22599A, A4884G, T22896C ( instead of A22896C ,the starting nuc should be always the WT one or empty if unsure of what it is)
Anyway a better query is G22599A, A4884G, T27152C that finds all 5 samples

Thank you as always. I'm sorry I haven't done the basics. I want to learn little by little and make fewer mistakes.

You are doing great don't worry we are here to help each other and share info to improve our skills.