-
Notifications
You must be signed in to change notification settings - Fork 152
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
TypeError: Object dtype dtype('O') has no native HDF5 equivalent #636
Comments
just fyi, here is the output from
|
Hey! |
I think this is related to #504, but is a bit different because I don't think the column giving the error is
@AB1995UCSF, you should be fine to write this if you just don't call adata = anndata.AnnData(
...,
obs=pd.read_csv('/path/Human_M1_data/metadata.csv').set_index("sample_name"),
...,
) |
This issue has been automatically marked as stale because it has not had recent activity. |
@ivirshup any idea what solution we want to go with? |
This issue has been automatically marked as stale because it has not had recent activity. |
Hi there,
I am running into this error when I am trying a h5ad file from my Anndata object. I downloaded a dataset from the Allen Brain Atlas [1], and then I loaded it using this code:
And then I run the following to try and convert objects to strings:
And then when I tried to write it with:
Then I got the following error:
Thank. you so much for your help!
Dataset
[1] https://portal.brain-map.org/atlases-and-data/rnaseq/human-m1-10x
The text was updated successfully, but these errors were encountered: