diff --git a/_quarto.yml b/_quarto.yml
index 4543b0f..959ab75 100644
--- a/_quarto.yml
+++ b/_quarto.yml
@@ -3,8 +3,8 @@ project:
website:
title: "Glittr.org statistics"
+ favicon: "assets/icon/icon-stroke.svg"
navbar:
- background: "#8338ec"
left:
- href: index.qmd
text: Home
@@ -12,16 +12,20 @@ website:
- icon: github
href: https://github.com/sib-swiss/glittr-stats/
aria-label: GitHub
+ sidebar:
+ logo: "assets/logo/logo-with-domain.svg"
format:
html:
theme:
- - default
+ - cosmo
- custom.scss
+ highlight-style: ayu
toc: true
code-link: true
header-includes: |
-
+
+
execute:
freeze: auto
diff --git a/assets/icon/icon-stroke.svg b/assets/icon/icon-stroke.svg
new file mode 100644
index 0000000..90b10eb
--- /dev/null
+++ b/assets/icon/icon-stroke.svg
@@ -0,0 +1,94 @@
+
+
+
+
diff --git a/assets/logo/logo-vertical.svg b/assets/logo/logo-vertical.svg
new file mode 100644
index 0000000..0b347c4
--- /dev/null
+++ b/assets/logo/logo-vertical.svg
@@ -0,0 +1,224 @@
+
+
+
+
diff --git a/assets/logo/logo-with-domain-tagline.svg b/assets/logo/logo-with-domain-tagline.svg
new file mode 100644
index 0000000..923eed6
--- /dev/null
+++ b/assets/logo/logo-with-domain-tagline.svg
@@ -0,0 +1,291 @@
+
+
+
+
diff --git a/assets/logo/logo-with-domain.svg b/assets/logo/logo-with-domain.svg
new file mode 100644
index 0000000..bd078d7
--- /dev/null
+++ b/assets/logo/logo-with-domain.svg
@@ -0,0 +1,95 @@
+
+
+
+
diff --git a/custom.scss b/custom.scss
index 39787fd..faa51ad 100644
--- a/custom.scss
+++ b/custom.scss
@@ -1,13 +1,10 @@
-@import url('https://fonts.cdnfonts.com/css/cabinet-grotesk');
-@import url('https://fonts.googleapis.com/css?family=Inter');
+@import url('https://fonts.bunny.net/css?family=source-sans-3:200,400,600,700&display=swap');
/*-- scss:defaults --*/
// Base document colors
-$headings-font-family: 'Cabinet grotesk';
-$font-family-sans-serif: 'Inter';
+$headings-font-family: 'Source Sans 3';
+$font-family-sans-serif: 'Source Sans 3';
$code-color: #ae191a;
-$link-color: #009ee3;
-$navbar-bg: #ae191a;
$kbd-color: #ae191a;
$kbd-bg: #ae191a;
$pre-color: #747473;
diff --git a/grid_plot_fig1.pdf b/grid_plot_fig1.pdf
deleted file mode 100644
index 3b781b4..0000000
Binary files a/grid_plot_fig1.pdf and /dev/null differ
diff --git a/grid_plot_fig2.pdf b/grid_plot_fig2.pdf
index 65e6c66..53ff7b9 100644
Binary files a/grid_plot_fig2.pdf and b/grid_plot_fig2.pdf differ
diff --git a/index.qmd b/index.qmd
index d0ff869..bf38c0a 100644
--- a/index.qmd
+++ b/index.qmd
@@ -4,9 +4,11 @@ format:
html
---
+In this report you can find some general statistics about [Glittr.org](glittr.org). The plots and statistics created are amongst others used in the manuscript. Since Glittr.org is an ongoing project these statistics are updated weekly.
+
## Set up the environment
-Loading required packages.
+This is required if you run this notebook locally. Loading required packages.
```{r}
#| output: false
@@ -19,7 +21,7 @@ library(downlit)
library(xml2)
```
-Create a file named `.env` and add your GitHub PAT (variable named `PAT` ) and google api key (named `GOOGLE_API_KEY`) in there, e.g.:
+To run locally, create a file named `.env` and add your GitHub PAT (variable named `PAT` ) and google api key (named `GOOGLE_API_KEY`) in there, e.g.:
```{bash, eval=FALSE}
# this is an example, store it as .env: