From 49eabd0d035856d88a7834e6362b82f9b85e3ace Mon Sep 17 00:00:00 2001 From: Guillaume Lemaitre Date: Fri, 7 Jun 2024 18:09:14 +0200 Subject: [PATCH] move everything into pyproject.toml --- pixi.lock | 1823 +++++++++++++++++++++++------------------------- pixi.toml | 84 --- pyproject.toml | 113 ++- setup.cfg | 86 --- setup.py | 4 - 5 files changed, 999 insertions(+), 1111 deletions(-) delete mode 100644 pixi.toml delete mode 100644 setup.cfg delete mode 100644 setup.py diff --git a/pixi.lock b/pixi.lock index 0f0a50abc..b592060e1 100644 --- a/pixi.lock +++ b/pixi.lock @@ -302,9 +302,9 @@ environments: - conda: https://conda.anaconda.org/conda-forge/noarch/tzdata-2024a-h0c530f3_0.conda - conda: https://conda.anaconda.org/conda-forge/win-64/ucrt-10.0.22621.0-h57928b3_0.tar.bz2 - conda: https://conda.anaconda.org/conda-forge/noarch/urllib3-2.2.1-pyhd8ed1ab_0.conda - - conda: https://conda.anaconda.org/conda-forge/win-64/vc-14.3-ha32ba9b_20.conda - - conda: https://conda.anaconda.org/conda-forge/win-64/vc14_runtime-14.38.33135-h835141b_20.conda - 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version: 14.38.33135 - build: h22015db_20 + version: 14.40.33810 + build: h3bf8584_20 build_number: 20 subdir: win-64 - url: https://conda.anaconda.org/conda-forge/win-64/vs2015_runtime-14.38.33135-h22015db_20.conda - sha256: 2cebabc39766ea051e577762d813ad4151e9d0ff96f3ff3374d575a272951416 - md5: bb4f5ab332e46e1b022d8842e72905b1 + url: https://conda.anaconda.org/conda-forge/win-64/vs2015_runtime-14.40.33810-h3bf8584_20.conda + sha256: 0c2803f7a788c51f28235a7228dc2ab3f107b4b16ab0845a3e595c8c51e50a7a + md5: c21f1b4a3a30bbc3ef35a50957578e0e depends: - - vc14_runtime >=14.38.33135 + - vc14_runtime >=14.40.33810 license: BSD-3-Clause license_family: BSD - size: 17124 - timestamp: 1716231247457 + size: 17395 + timestamp: 1717709043353 - kind: conda name: webcolors version: 24.6.0 diff --git a/pixi.toml b/pixi.toml deleted file mode 100644 index 77d83b9ae..000000000 --- a/pixi.toml +++ /dev/null @@ -1,84 +0,0 @@ -[project] -name = "skrub" -version = "0.2.0" -description = "Prepping tables for machine learning" -channels = ["conda-forge"] -authors = ["Patricio Cerda "] -platforms = ["linux-64", "osx-64", "osx-arm64", "win-64"] -license = "BSD-3-Clause" -homepage = "https://skrub-data.org/" -readme = "README.rst" - -[dependencies] -python = ">=3.10" -numpy = ">=1.23.5" -packaging = ">=23.1" -pandas = ">=1.5.3" -scikit-learn = ">=1.2.1" -scipy = ">=1.9.3" - -[pypi-dependencies] -skrub = { path = ".", editable = true } - -[feature.optional.dependencies] -pyarrow = "*" -polars = "*" - -[feature.min-dependencies.dependencies] -numpy = "==1.23.5" -pandas = "==1.5.3" -scikit-learn = "==1.2.1" -scipy = "==1.9.3" - -[feature.doc.dependencies] -jupyterlite-sphinx = "*" -jupyterlite-pyodide-kernel = "*" -matplotlib = "*" -pydata-sphinx-theme = "*" -seaborn = "*" -sphinx = "*" -sphinx-copybutton = "*" -sphinx-gallery = "*" -sphinxext-opengraph = "*" -statsmodels = "*" - -[feature.lint.dependencies] -# The version below should be aligned with the one of `.pre-commit-config.yaml` -black = "==22.6.0" -flake8 = "5.0.4" -isort = "5.12.0" -mypy = "*" -pre-commit = "*" - -[feature.test.dependencies] -numpydoc = "*" -pytest = "*" -pytest-cov = "*" -pytest-xdist = "*" - -[feature.py310.dependencies] -python = "==3.10" -[feature.py311.dependencies] -python = "==3.11" -[feature.py312.dependencies] -python = "==3.12" - -[feature.doc.tasks] -build-doc = { cmd = "make html", cwd = "doc" } -clean-doc = { cmd = "rm -rf _build", cwd = "doc" } -[feature.lint.tasks] -lint = { cmd = "pre-commit install && pre-commit run -v --all-files --show-diff-on-failure" } -[feature.test.tasks] -test = { cmd = "pytest -vsl --cov=skrub --cov-report=xml skrub" } - -[environments] -lint = { features = ["lint"], no-default-feature = true } -doc = ["doc"] -test = ["test"] -dev = ["optional", "doc", "lint", "test"] -ci-py310-min-deps = ["py310", "min-dependencies", "test"] -ci-py311-min-deps = ["py311", "min-dependencies", "test"] -ci-py310-latest-deps = ["py310", "test"] -ci-py311-latest-deps = ["py311", "test"] -ci-py312-latest-deps = ["py312", "test"] -ci-py312-latest-optional-deps = ["py312", "optional", "test"] diff --git a/pyproject.toml b/pyproject.toml index 3c1ac6ca5..525e6a608 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,11 +1,114 @@ [build-system] -# Minimum requirements for the build system to execute. -requires = [ - "setuptools", - "wheel", -] +requires = ["setuptools>=64", "setuptools_scm[toml]>=8"] build-backend = "setuptools.build_meta" +[project] +name = "skrub" +version = "0.2.0" +description = "Prepping tables for machine learning" +authors = [ + { name="Patricio Cerda", email="patricio.cerda@inria.fr"}, +] +classifiers = [ + "Development Status :: 5 - Production/Stable", + "Environment :: Console", + "Intended Audience :: Science/Research", + "License :: OSI Approved :: BSD License", + "Operating System :: OS Independent", + "Programming Language :: Python :: 3.10", + "Programming Language :: Python :: 3.11", + "Programming Language :: Python :: 3.12", + "Topic :: Scientific/Engineering", + "Topic :: Software Development :: Libraries", +] +readme = "README.rst" + +[project.urls] +Homepage = "https://skrub-data.org/" +Source = "https://github.com/skrub-data/skrub" +Issues = "https://github.com/skrub-data/skrub/issues" + +[tool.setuptools.packages.find] +where = ["skrub"] + +[tool.pixi.project] +channels = ["conda-forge"] +platforms = ["linux-64", "osx-arm64", "osx-64", "win-64"] + +[tool.pixi.dependencies] +python = ">=3.10" +numpy = ">=1.23.5" +packaging = ">=23.1" +pandas = ">=1.5.3" +scikit-learn = ">=1.2.1" +scipy = ">=1.9.3" + +[tool.pixi.pypi-dependencies] +skrub = { path = ".", editable = true } + +[tool.pixi.feature.optional.dependencies] +pyarrow = "*" +polars = "*" + +[tool.pixi.feature.min-dependencies.dependencies] +numpy = "==1.23.5" +pandas = "==1.5.3" +scikit-learn = "==1.2.1" +scipy = "==1.9.3" + +[tool.pixi.feature.doc.dependencies] +jupyterlite-sphinx = "*" +jupyterlite-pyodide-kernel = "*" +matplotlib = "*" +pydata-sphinx-theme = "*" +seaborn = "*" +sphinx = "*" +sphinx-copybutton = "*" +sphinx-gallery = "*" +sphinxext-opengraph = "*" +statsmodels = "*" + +[tool.pixi.feature.lint.dependencies] +# The version below should be aligned with the one of `.pre-commit-config.yaml` +black = "==22.6.0" +flake8 = "5.0.4" +isort = "5.12.0" +mypy = "*" +pre-commit = "*" + +[tool.pixi.feature.test.dependencies] +numpydoc = "*" +pytest = "*" +pytest-cov = "*" +pytest-xdist = "*" + +[tool.pixi.feature.py310.dependencies] +python = "==3.10" +[tool.pixi.feature.py311.dependencies] +python = "==3.11" +[tool.pixi.feature.py312.dependencies] +python = "==3.12" + +[tool.pixi.feature.doc.tasks] +build-doc = { cmd = "make html", cwd = "doc" } +clean-doc = { cmd = "rm -rf _build", cwd = "doc" } +[feature.lint.tasks] +lint = { cmd = "pre-commit install && pre-commit run -v --all-files --show-diff-on-failure" } +[feature.test.tasks] +test = { cmd = "pytest -vsl --cov=skrub --cov-report=xml skrub" } + +[tool.pixi.environments] +lint = { features = ["lint"], no-default-feature = true } +doc = ["doc"] +test = ["test"] +dev = ["optional", "doc", "lint", "test"] +ci-py310-min-deps = ["py310", "min-dependencies", "test"] +ci-py311-min-deps = ["py311", "min-dependencies", "test"] +ci-py310-latest-deps = ["py310", "test"] +ci-py311-latest-deps = ["py311", "test"] +ci-py312-latest-deps = ["py312", "test"] +ci-py312-latest-optional-deps = ["py312", "optional", "test"] + [tool.black] line-length = 88 target_version = ['py310', 'py311'] diff --git a/setup.cfg b/setup.cfg deleted file mode 100644 index e6fbcf4e6..000000000 --- a/setup.cfg +++ /dev/null @@ -1,86 +0,0 @@ -[metadata] -name = skrub -version = file: skrub/VERSION.txt -description = Prepping tables for machine learning -long_description = file: README.rst -long_description_content_type = text/x-rst -author = Patricio Cerda -author_email = patricio.cerda@inria.fr -license = BSD -license_files = LICENSE.txt -classifiers = - Development Status :: 5 - Production/Stable - Environment :: Console - Intended Audience :: Science/Research - License :: OSI Approved :: BSD License - Operating System :: OS Independent - Programming Language :: Python :: 3.10 - Programming Language :: Python :: 3.11 - Programming Language :: Python :: 3.12 - Topic :: Scientific/Engineering - Topic :: Software Development :: Libraries -project_urls = - Homepage = https://skrub-data.org/ - Source = https://github.com/skrub-data/skrub - -[options] -include_package_data = True -packages = find: -install_requires = - scikit-learn>=1.2.1 - numpy>=1.23.5 - scipy>=1.9.3 - pandas>=1.5.3 - packaging>=23.1 -python_requires = >=3.10 - -[options.packages.find] -include = skrub* - -[options.extras_require] -dev = - pytest - pytest-cov - # XXX: pin pytest-xdist to workaround: - # https://github.com/pytest-dev/pytest-xdist/issues/840 - pytest-xdist==2.5.0 - pytest-xdist[psutil] - coverage - numpydoc - ruff - openml - pre-commit -pyarrow = - pyarrow -polars = - pyarrow - polars -doc = - sphinx-gallery - pydata-sphinx-theme - sphinxext-opengraph - sphinx-copybutton - matplotlib - seaborn - statsmodels - numpydoc - jupyterlite-sphinx - jupyterlite-pyodide-kernel - pyarrow -benchmarks = - numpy - pandas - matplotlib - seaborn - tqdm - thefuzz - autofj - pyarrow - loguru -# Overwrite the previous install_requires for CI testing purposes -# as defined in testing.yml. -min-py310 = - scikit-learn==1.2.1 - numpy==1.23.5 - scipy==1.9.3 - pandas==1.5.3 diff --git a/setup.py b/setup.py deleted file mode 100644 index 7f1a1763c..000000000 --- a/setup.py +++ /dev/null @@ -1,4 +0,0 @@ -from setuptools import setup - -if __name__ == "__main__": - setup()