Problem with multi-line script strings

[holtgrewe]

rule top:
    shell:
        r"""
        Multi_line
        """

becomes

rule top:
    shell:
        r"""
                Multi_line
                """

becomes

rule top:
    shell:
        r"""
                        Multi_line
                        """

etc.

[mbhall88]

Hi @holtgrewe

Can I ask why you are using an r-string? If you remove the r snakefmt produces the desired output.

[holtgrewe]

@mbhall88 thanks for the info. I'm using the string as I'm regularly using \ in my shell scripts :D

[mbhall88]

Ah yes, I figured that might be the case. Ok, we will work on implementing a fix for this and let you know.

[mbhall88]

@holtgrewe could you try out the tip of dev and make sure it fixes issue for you?

[bricoletc]

I added an extra fix for when you have several triple quoted strings consecutively like

rule top:
    shell:
        r"""
        Multi_line
        """
        f"""
        Other Multi_line
        """

I discovered we were failing on this, is now covered.

[bricoletc]

@holtgrewe could you try out the tip of dev and make sure it fixes issue for you?

@mbhall88 I think we can close and let @holtgrewe or anyone else comment here if relevant?