diff --git a/bio/gatk3/indelrealigner/environment.linux-64.pin.txt b/bio/gatk3/indelrealigner/environment.linux-64.pin.txt
index 94dfb406cb..87f9aaaa5c 100644
--- a/bio/gatk3/indelrealigner/environment.linux-64.pin.txt
+++ b/bio/gatk3/indelrealigner/environment.linux-64.pin.txt
@@ -5,103 +5,107 @@
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+https://conda.anaconda.org/conda-forge/linux-64/libblas-3.9.0-24_linux64_openblas.conda#80aea6603a6813b16ec119d00382b772
+https://conda.anaconda.org/conda-forge/linux-64/libcurl-8.10.1-hbbe4b11_0.conda#6e801c50a40301f6978c53976917b277
+https://conda.anaconda.org/conda-forge/noarch/setuptools-75.1.0-pyhd8ed1ab_0.conda#d5cd48392c67fb6849ba459c2c2b671f
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+https://conda.anaconda.org/conda-forge/noarch/wheel-0.44.0-pyhd8ed1ab_0.conda#d44e3b085abcaef02983c6305b84b584
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-https://conda.anaconda.org/conda-forge/noarch/pip-24.2-pyhd8ed1ab_0.conda#6721aef6bfe5937abe70181545dd2c51
+https://conda.anaconda.org/conda-forge/linux-64/curl-8.10.1-hbbe4b11_0.conda#73c561c6b84bda71776c9fa21517e7eb
+https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.9.0-24_linux64_openblas.conda#f5b8822297c9c790cec0795ca1fc9be6
+https://conda.anaconda.org/conda-forge/linux-64/liblapack-3.9.0-24_linux64_openblas.conda#fd540578678aefe025705f4b58b36b2e
+https://conda.anaconda.org/conda-forge/noarch/pip-24.2-pyh8b19718_1.conda#6c78fbb8ddfd64bcb55b5cbafd2d2c43
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 https://conda.anaconda.org/conda-forge/linux-64/pango-1.54.0-h4c5309f_1.conda#7df02e445367703cd87a574046e3a6f0
-https://conda.anaconda.org/conda-forge/linux-64/r-base-4.4.1-h745b8e0_14.conda#fb6648c142f3bc891f2bdfd8f2d28340
+https://conda.anaconda.org/conda-forge/linux-64/r-base-4.4.1-h518d376_15.conda#546e03ae83233024b52dedce484e0baf
 https://conda.anaconda.org/conda-forge/linux-64/r-bitops-1.0_8-r44hdb488b9_0.conda#61ca33f2e0ba7d494ea65a526839e418
 https://conda.anaconda.org/conda-forge/linux-64/r-cli-3.6.3-r44h0d4f4ea_1.conda#4f07a3d62def16d73303c8435e17a62e
 https://conda.anaconda.org/conda-forge/linux-64/r-colorspace-2.1_1-r44hdb488b9_0.conda#fcc0b0959eb8b3ea4ce2bb8818cea10e
@@ -125,7 +129,7 @@ https://conda.anaconda.org/conda-forge/linux-64/r-rlang-1.1.4-r44ha18555a_1.cond
 https://conda.anaconda.org/conda-forge/linux-64/r-utf8-1.2.4-r44hb1dbf0f_1.conda#11331e679a538de7c85ced8d293394a2
 https://conda.anaconda.org/conda-forge/noarch/r-viridislite-0.4.2-r44hc72bb7e_2.conda#7cf7a6974364e6853f1a06554dfaa3e5
 https://conda.anaconda.org/conda-forge/noarch/r-withr-3.0.1-r44hc72bb7e_0.conda#b9171dfd69c9d0e35ffc8927f79e447f
-https://conda.anaconda.org/conda-forge/linux-64/r-catools-1.18.2-r44ha18555a_3.conda#82ce8ed9e8dc9a2f818d89fcf27d4e8f
+https://conda.anaconda.org/conda-forge/linux-64/r-catools-1.18.3-r44h93ab643_0.conda#501824f16bfbc1f6a9a83d281b5a546d
 https://conda.anaconda.org/conda-forge/linux-64/r-ellipsis-0.3.2-r44hb1dbf0f_3.conda#a96cb6b4b61efd45ffe47019af5eb879
 https://conda.anaconda.org/conda-forge/noarch/r-lifecycle-1.0.4-r44hc72bb7e_1.conda#66d0ba7c05d0abfa11d126ba8e2907aa
 https://conda.anaconda.org/conda-forge/linux-64/r-matrix-1.6_5-r44he966344_1.conda#bbcb8fe02b64b3b69bf078f2020f7446
diff --git a/bio/gatk3/indelrealigner/environment.yaml b/bio/gatk3/indelrealigner/environment.yaml
index cfa44daec8..ce037e6027 100644
--- a/bio/gatk3/indelrealigner/environment.yaml
+++ b/bio/gatk3/indelrealigner/environment.yaml
@@ -4,5 +4,5 @@ channels:
   - nodefaults
 dependencies:
   - gatk =3.8
-  - python =3.12.5
+  - python =3.12.6
   - snakemake-wrapper-utils =0.6.2