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linclust on fasta file or DB file? #892

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MarliesJFrancine opened this issue Sep 24, 2024 · 0 comments
Open

linclust on fasta file or DB file? #892

MarliesJFrancine opened this issue Sep 24, 2024 · 0 comments

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@MarliesJFrancine
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Hi,

I want to cluster a large dataset of DNA sequences. Must I first convert my fasta file into a DB format file? As is written here: https://github.com/soedinglab/MMseqs2/wiki#linclust, or can I use my fasta file directly? As is written here on the GitHub page.

What is the best approach here?

Kind regards,
Marlies

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