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add large scale/batch signature renaming #1883

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ctb opened this issue Mar 12, 2022 · 2 comments
Open

add large scale/batch signature renaming #1883

ctb opened this issue Mar 12, 2022 · 2 comments
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@ctb
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ctb commented Mar 12, 2022

something we could usefully use for database construction (including for private database construction in genome-grist, e.g. dib-lab/genome-grist#130) is the ability to rename sketches via a spreadsheet/CSV file.

I was thinking of something like this:

sourmash sig rename --names-from-csv <csvfile> <list of input sigs> -o <zip collection>

where <csvfile> could contain a list of identifier-name pairs, specifying what the output names should be based on the identifier; or a list of md5sum-name pairs, for same.

@ctb ctb changed the title add large scale renaming signature renaming functionality add large scale/batch signature renaming Mar 13, 2022
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ctb commented Mar 13, 2022

ref #1315, which is more about assigning name at time of sketching.

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ctb commented Mar 19, 2022

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