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Search databases for IMG genomes #385

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ilnamkang opened this issue Jan 17, 2018 · 1 comment

ilnamkang commented Jan 17, 2018

Hello,

I came to know that sourmash search databases for IMG genomes have been prepared recently.
(http://ivory.idyll.org/blog/2017-taxonomic-disagreements-in-tara-mags.html)

Are these sourmash search databases for 60,000 genomes from the JGI IMG available publicly? If so, where can I get the databases?

Thanks.

Contributor

ctb commented May 24, 2020

took a long time but...

IMG (as of 2017-10-01) on OSF:
k=21: https://osf.io/vzuk6/
k=31: https://osf.io/7g2s5/
k=51: https://osf.io/mqsfj/

ctb mentioned this issue

sourmash database construction - current status and future thoughts #2015

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