sourmash lca classify does not write file

[taylorreiter]

In sourmash version 3.2.2, with command

for infile in *sig 
do
    sourmash lca classify --db ../../../genbank-k21.lca.json.gz --query ${infile} -o ${infile}.lca_class_k21.csv
done

Get the following error:

Traceback (most recent call last):
  File "/home/tereiter/miniconda3/envs/ibd/bin/sourmash", line 11, in <module>
    sys.exit(main())
  File "/home/tereiter/miniconda3/envs/ibd/lib/python3.7/site-packages/sourmash/__main__.py", line 14, in main
    return mainmethod(args)
  File "/home/tereiter/miniconda3/envs/ibd/lib/python3.7/site-packages/sourmash/cli/lca/classify.py", line 30, in main
    return sourmash.lca.command_classify.classify(args)
  File "/home/tereiter/miniconda3/envs/ibd/lib/python3.7/site-packages/sourmash/lca/command_classify.py", line 116, in classify
    csvfp.writerow(['ID','status'] + list(lca_utils.taxlist()))
ValueError: I/O operation on closed file.

[taylorreiter]

with the -o parameter removed, the command runs as expected

[ctb]

fixed in master; see #900

[taylorreiter]

whoops, thanks!

[taylorreiter]

For the time being I rolled back to version 3.0.1 on conda and this now works :) I could have installed from master but...conda.