From 307ef80e7043e3b375f4e6a55eda01af497b74a1 Mon Sep 17 00:00:00 2001 From: "C. Titus Brown" Date: Sun, 4 Feb 2024 17:00:57 -0800 Subject: [PATCH] update tutorial to remove bioconda --- doc/tutorial-install.md | 13 +------------ 1 file changed, 1 insertion(+), 12 deletions(-) diff --git a/doc/tutorial-install.md b/doc/tutorial-install.md index 36b0215254..a3bd258890 100644 --- a/doc/tutorial-install.md +++ b/doc/tutorial-install.md @@ -22,23 +22,12 @@ source ~/.bash_profile ``` otherwise, follow the instructions [here](https://github.com/conda-forge/miniforge#install). -## Add bioconda - -sourmash is installed from the [bioconda software channel](https://bioconda.github.io/), so you'll need to add that to your config: - -``` -conda config --add channels defaults -conda config --add channels bioconda -conda config --add channels conda-forge -conda config --set channel_priority strict -``` - ## Install sourmash To install sourmash, create a new environment named `smash` and install sourmash: ``` -mamba create -y -n smash sourmash +mamba create -y -n smash sourmash-minimal ``` and then activate: