analyze real datasets

[dalessioluca]

Tommaso Biancalani and Alma Andersson check VIsium Data

AGENDA (5/8/20)

1. Complete review of outline of manuscript
   ---(Updated for accuracy)
2. Discussion of how to integrate Visium/slide-seq
3. Review of other tasks
   ---Additional annotations for final data sets?
   ---Segmentation group status?
   ---Visualization demo (this week or next week?)

   From Eeshit Dhaval Vaishnav to Me: (Privately) (2:03 PM)
   
aah nice to see the lake again

   From Richard Scheuermann to Everyone: (2:05 PM)
   
Has the segmentation been finalized?

   From Eeshit Dhaval Vaishnav to Everyone: (2:40 PM)
   
For comparing segmentation results, the F1 score, Dice Index and Hausdorff distance would be good metrics . ( I have used them before and have code for computing each , lmk if that is helpful during the segmentation comparison stage )

   From Me to Everyone: (2:48 PM)
   
What is the required input?Share the script for the comparison.
Thanks!