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to do tomorrow #36

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dalessioluca opened this issue Aug 19, 2020 · 0 comments
Open

to do tomorrow #36

dalessioluca opened this issue Aug 19, 2020 · 0 comments
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@dalessioluca
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dalessioluca commented Aug 19, 2020

Merge 60 into 55 and then 55 into master

USE THE DATALOADER I HAVE.
JUST SAVE ON CPU AND LOAD TO GPU EVERY BATCH
put the result of the tiling function on CPU if necessary

LOAD CKPT FROM HERE USE PRETRAINED TO OBTAIN GOOD SEGMENTATION
ld-results-bucket/merfish_june25_v7

graphclustering 65
#TODO: Compute median density of connected components so that resolution parameter is about 1
self.reference_density = AUCH

NAMEDTUPLE 151

#TODO: this might be too slow. Eliminate torch.bincount.
new_dict = self.params
new_dict["filter_by_size"] = (min_size, max_size)
new_membership = old_2_new[self.membership]
return self._replace(membership=new_membership, params=new_dict, sizes=torch.bincount(new_membership))

@dalessioluca dalessioluca self-assigned this Aug 19, 2020
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