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Processing large fields of views #4

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atarkowska opened this issue Oct 15, 2019 · 2 comments
Open

Processing large fields of views #4

atarkowska opened this issue Oct 15, 2019 · 2 comments

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@atarkowska
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atarkowska commented Oct 15, 2019 •
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It would be useful if image/plane greater then Starfish 3Kx3K threashold (spacetx/starfish#627) could be retiled to 2D files for processing large fields of views

Simillar to what is possible in bfconvert https://docs.openmicroscopy.org/bio-formats/6.2.1/users/comlinetools/conversion.html#cmdoption-bfconvert-tilex
@atarkowska atarkowska changed the title Tiling Processing large fields of views Oct 15, 2019
@ttung
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ttung commented Oct 15, 2019

We don't have a tile size threshold any more, AFAIK.

@joshmoore
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https://github.com/spacetx/starfish/blob/master/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/tiles.json#L50 ?

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@joshmoore @ttung @atarkowska