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Issues with build? #8

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Boehmin opened this issue May 4, 2023 · 0 comments
Open

Issues with build? #8

Boehmin opened this issue May 4, 2023 · 0 comments

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@Boehmin
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Boehmin commented May 4, 2023

I have been trying to get my .nd2 images in spacetx format, but since I have many FOVs ~2TB in size across 12 rounds on an individual FOV basis (i.e. sect1_Time00000_Point0007_ChannelL-750,DAPI,L-488_Seq0007.nd2), I really struggled to load them with the existing starfish tutorials without having to split them tediously into separate DAPI and FISH channels.

I was hoping the spacetxx-writer would help, and from the looks of it, it built without issues using docker. I did not get an error message. The last few lines of the build were:

=> exporting to image                                                                                                                0.1s 
=> => exporting layers                                                                                                               0.1s 
=> => writing image sha256:a735297a4368641df2b309ffeab42a1116d60022dabef2059c9fbc0010b9ac92                                          0.0s 
=> => naming to docker.io/library/spacetx-writer  

When trying to run spacetx-writer, I get the following error:
zsh: command not found: spacetx-writer

I am not certain if something went wrong with the build, or what I am doing wrong. I followed the usage instructions of the simple example with my filenames, but find it a little hard to trouble shoot.

I am running this on a Mac OsX Ventura 13.3.1 (M1 Max, 32GB)

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