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Trying to use the package: accessing the METADATA_URL #125

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shivUSF opened this issue Jan 19, 2024 · 1 comment
Open

Trying to use the package: accessing the METADATA_URL #125

shivUSF opened this issue Jan 19, 2024 · 1 comment

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@shivUSF
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shivUSF commented Jan 19, 2024

Thank you so much for building this package. I have a large bone marrow dataset approx. 500k cells. I am currently trying to annotate it. This package looks very easy to access the reference data from Human cell Atlas
I want to download the bone marrow dataset with all its metadata information especially the cell_type section.
I am not able to fully understand this part
metadata <- [get_metadata](https://stemangiola.github.io/CuratedAtlasQueryR/reference/get_metadata.html)(remote_url = METADATA_URL)
What would be the link here to access the bone marrow data ?
If you could guide me a little would be great help.

@multimeric
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You don't need to provide any arguments to get_metadata(). It has a default value which is what you want to use.

This is explained in the vignette, but can I ask what part of the documentation made you think you needed to pass in an argument there? It might be possible to clarify this for future users.

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