From 8bb188fde49be7972576d42cd4097fcc4ac9910e Mon Sep 17 00:00:00 2001
From: "Naomi Wilson, PhD" <32494036+naomiwilson@users.noreply.github.com>
Date: Thu, 20 Jun 2024 14:11:17 -0500
Subject: [PATCH] Update README.md

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index 84e61c7..74c9a0a 100755
--- a/README.md
+++ b/README.md
@@ -29,7 +29,7 @@ N.B. For sunbeam versions <4 the last command will be something like `sunbeam ru
 
 ## Configuration
 
-  - genomes_fp: Is the filepath to your reference genomes (in fasta format) **references must have .fasta extension!!**
+  - genomes_fp: Is the filepath to your reference genomes (in fasta format) **all references must have .fasta OR .fa OR .fna extension!!**
   - samtools_opts: Are the options passed to samtools view
   - alnLen: Is the minimum alignment length
   - percIdentity: Is the minimum percent identity