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Compute and plot gene module scores over pseudotime #1202

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sohrabsa opened this issue Jun 13, 2024 · 2 comments
Open

Compute and plot gene module scores over pseudotime #1202

sohrabsa opened this issue Jun 13, 2024 · 2 comments
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@michalk8
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enhancement New feature or request

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@sohrabsa
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@sohrabsa sohrabsa added the enhancement New feature or request label Jun 13, 2024
@sohrabsa
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Hi,

It’d be great to add a method to allow the computation and plotting of a module. Something like the plot gene trends function, but for a (potentially pre-computed) score.

Thank you!

@Marius1311
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That would basically require the cellrank.pl.gene_trends function to accept .obs attributes for plotting - feel free to open a PR for this @sohrabsa

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@sohrabsa @Marius1311 @michalk8