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Sorry I completely forgot this was on branch newfeatures. I've now included the flu trees and proper documentation in the master branch, along with the Dengue trees as promised. I haven't put the flu trees as an automatic example in Shiny because they're quite big and a bit slow, but they're a great example to include in the package, thanks.
You said you used the first 200 trees from the BEAST run - did you already discard some trees as a burn-in? It usually makes more sense to use the final 200 or a random sample of 200 from the second half, was there a reason not to do that here? Thanks.
From one of the well-known practicals. We basically just need to posterior sample of trees
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