setup.py

import os
import sys
import logging
import subprocess
from setuptools import setup, find_packages

logging.basicConfig(stream=sys.stderr, level=logging.INFO)
log = logging.getLogger()

# package description and keywords
description = ('Python-based reader for Level-1b Airborne Topographic '
    'Mapper (ATM) QFIT binary data products')
keywords = 'NSIDC, Operation IceBridge, ILATM1b, ILNSA1b, surface elevation and change'

# get long_description from README.rst
with open("README.rst", mode='r', encoding='utf8') as fh:
    long_description = fh.read()
long_description_content_type = "text/x-rst"

# get install requirements
with open('requirements.txt', encoding='utf8') as fh:
    install_requires = [line.split().pop(0) for line in fh.read().splitlines()]

# list of all scripts to be included with package
scripts=[os.path.join('scripts',f) for f in os.listdir('scripts') if f.endswith('.py')]

# run cmd from the command line
def check_output(cmd):
    return subprocess.check_output(cmd).decode('utf')

# check if HDF5 is installed
hdf5_output = [None] * 2
try:
    for i, cmd in enumerate((["h5cc","-showconfig"], ["h5dump","--version"])):
        hdf5_output[i] = check_output(cmd).strip()
    # parse HDF5 version from h5dump
    hdf5_version = hdf5_output[1].split().pop(2)
except Exception as e:
    log.warning('Failed to get HDF5 options')
else:
    log.info(f"HDF5 version from via h5dump: {hdf5_version}")
# if the HDF5 version not found
if not any(hdf5_output) and ('h5py' in install_requires):
    hdf5_index = install_requires.index('h5py')
    install_requires.pop(hdf5_index)

# get version
with open('version.txt', encoding='utf8') as fh:
    version = fh.read()

setup(
    name='ATM1b-QFIT',
    version=version,
    description=description,
    long_description=long_description,
    long_description_content_type=long_description_content_type,
    url='https://github.com/tsutterley/read-ATM1b-QFIT-binary',
    author='Tyler Sutterley',
    author_email='tsutterl@uw.edu',
    license='MIT',
    classifiers=[
        'Development Status :: 3 - Alpha',
        'Intended Audience :: Science/Research',
        'Topic :: Scientific/Engineering :: Physics',
        'License :: OSI Approved :: MIT License',
        'Programming Language :: Python :: 3',
        'Programming Language :: Python :: 3.6',
        'Programming Language :: Python :: 3.7',
        'Programming Language :: Python :: 3.8',
    ],
    keywords=keywords,
    packages=find_packages(),
    install_requires=install_requires,
    scripts=scripts,
    include_package_data=True,
)