Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Links are not standardized #45

Open
EvelinaBiserova opened this issue Apr 29, 2021 · 3 comments
Open

Links are not standardized #45

EvelinaBiserova opened this issue Apr 29, 2021 · 3 comments
Labels
question Further information is requested

Comments

@EvelinaBiserova
Copy link
Contributor

EvelinaBiserova commented Apr 29, 2021

See list of links similar to

http://archive.ugene.net/downloads/:

  • download-all, download-all (ru)
    • Reference Data for NGS
    • Old UGENE Packages
  • documentation (ru)
    • Пособие для Всероссийского семинара «Современные физико-химические методы в индикации и идентификации возбудителей инфекционных болезней» (26-27 марта 2013)

https://f000.backblazeb2.com/file/uniprougene/:

https://github.com/ugeneunipro/ugene/releases/download/38.1/ugene-38.1-*.exe:

https://drive.google.com/drive/folders/:

http://ugene.net/:

  • hpc
    • here
    • here

Is it possible to make at least some of links similar?

UPD: updated on 14.05.21.

@EvelinaBiserova EvelinaBiserova added the question Further information is requested label Apr 29, 2021
@yalgaer
Copy link
Collaborator

yalgaer commented Apr 30, 2021

We have several kind of download links for different reasons:

  1. ugene.net - it is part of the web site. We can store any kind of data here (images/small read-only docs).

  2. github.com: we host our release packages on GitHub starting from v 34.

  3. B2 links: we store big old releases/youtube videos today (pre-github) for free (today). Later we can start paying for this hosting and add more data there..

  4. archive.ugene.net - here we host 100Gb+ data for NGS tools for free. This is old and outdated data. I see no future for these data sets unless someone will volunteer to support that tools/datasets.

  5. drive.google.com/drive/folders/ - here we store small individual downloadable documents. We use it by historical reasons.

  6. ugeneunipro.github.io - there should be no such links anymore.

Finally IMO we should have only github & b2 links, but this task is out of scope (has too low priority) today.
The main goal today is to have all links working for users.

@yalgaer yalgaer closed this as completed Apr 30, 2021
@EvelinaBiserova
Copy link
Contributor Author

archive.ugene.net - here we host 100Gb+ data for NGS tools for free. This is old and outdated data. I see no future for these data sets unless someone will volunteer to support that tools/datasets.

Based on the message "Error configuring NCBI Taxonomy to use with Metagenomics workflow" from our email, the NGS data is still being downloaded. What is required of a volunteer to support that tools/datasets?

@yalgaer yalgaer reopened this May 11, 2021
@yalgaer
Copy link
Collaborator

yalgaer commented May 11, 2021

We are not producers for that data: this data has its original location.
First, I think it would be good if the data is downloaded from the original sources.

Next, we have different NGS data-sets and some of these data-sets are for tools that are not supported/fixed/updated by the original authors. IMO there is no reason to support such complex and not popular workflows for us today as long with their data.

A volunteer should check all the tools, decide which data is valid and is not and find a better way/server to make it downloadable for users.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
question Further information is requested
Projects
None yet
Development

No branches or pull requests

2 participants