edge_plot.py

import pylab,numpy
from matplotlib.font_manager import fontManager, FontProperties


#set fonts here
font= FontProperties(size='small')
params = {'backend': 'ps',
          'axes.labelsize': 18,
          'xtick.labelsize': 16,
          'ytick.labelsize': 16,
          'legend.fontsize': 16,
          #'font.family': 'sans',
          'font.serif': ['Times','Palatino','serif'],
          'font.size': 16,
          'ps.usedistiller': 'xpdf',  
          }
pylab.rcParams.update(params)


#set figure size
csize=6 #inches = 2.95 used in chemosphere
fig_size=(csize,csize*1.618)
#adjust spacing


#yt = [0, 500, 1500, 2500, 3500]  #y axis ticks

fig = pylab.figure()

fig.subplots_adjust(top=0.95,bottom=0.1,left=0.10,right=0.93,hspace=0.35,wspace=0.2)

# this is plot 1 with Procut orange data


ax = fig.add_subplot(1,1,1)

diameters = [ 1, 2, 3, 4, 5 ]
counts = [ 3, 593,3505, 675, 11 ] 

#ax.plot(diameters,counts,'k--',alpha=0.5)
for d,c in zip(diameters,counts):
    ax.plot([d,d],[1,c],'k--')

ax.semilogy(diameters,counts,'ro')
#rects1 = ax.bar(ind+width, procutMeans, width, color='r', yerr=procutStd)
#rects1 = ax.bar(ind, procutMeans, width, color='r', yerr=procutStd)
# add some
ax.set_xlabel('Diameter with only Edges')
#ax.xaxis.set_label_coords(0.5, -0.12)
ax.set_ylabel('Count (log scale)')
ax.set_title('Global statistics')
ax.set_xticks([0] + diameters + [6])
#ax.set_yticks(yt)
ax.set_xticklabels( ['0','1','2','3','4','5','6'], horizontalalignment='center')
a=ax.axis([0,6,1,numpy.max(counts)*5])



#ax.legend( ('Procut Orange',), loc=1 ) #add trailing comma to make it a tuple so full word is printed



pylab.savefig('./paper/figures/edge_diameters.png', dpi=300)
pylab.show()