DESCRIPTION

Package: BacArena
Title: Modeling Framework for Cellular Communities in their Environments
Version: 1.8.2
Authors@R: c( person("Eugen", "Bauer", , "eugen.bauer@uni.lu", role = c("aut")), 
              person("Johannes", "Zimmermann", , "j.zimmermann@iem.uni-kiel.de", role = c("aut", "cre")))
Author: Eugen Bauer [aut],
    Johannes Zimmermann [aut, cre]
Maintainer: Johannes Zimmermann <j.zimmermann@iem.uni-kiel.de>
Description: Can be used for simulation of organisms living in
    communities (Bauer and Zimmermann (2017) <doi:10.1371/journal.pcbi.1005544>). 
    Each organism is represented individually and genome scale
    metabolic models determine the uptake and release of compounds. Biological
    processes such as movement, diffusion, chemotaxis and kinetics are available
    along with data analysis techniques.
URL: https://BacArena.github.io/
BugReports: https://github.com/euba/BacArena/issues
Depends:
    R (>= 3.0.0),
    sybil (>= 2.1.3),
    ReacTran (>= 1.4.2),
    deSolve (>= 1.12),
    Matrix (>= 1.2)
Imports:
    methods,
    utils,
    stats,
    graphics,
    ggplot2,
    reshape2,
    glpkAPI,
    plyr,
    Rcpp,
    igraph,
    stringr,
    R.matlab,
    foreach,
    combinat
Suggests:
    parallel,
    knitr,
    rmarkdown
LinkingTo: Rcpp,
    RcppArmadillo,
    RcppEigen
License: GPL-3 | file LICENSE
VignetteBuilder: knitr
RoxygenNote: 7.2.3
LazyData: true